Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:14688

Aliases

AA409223
C77571, ENSMUSG00000029064, Gnb-1
Gnb1, MGI:95781, NCBI:14688
OFF:Gnb1

Chromosome

4

Transcripts

137 ORFs
9 known transcripts
371 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

515292 ENSMUST00000177094 Gnb1-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    sORF
B_cell, R1E
1414 84

CTG ...

LET ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
B_cell, R1E, Spleen_B_cell
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
B_cell
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    sORF
B_cell, MEF
709 69

GTG ...

VPC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
BMDC, R1E
60364 96

ATG ...

MLV ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    sORF
BMDC, Spleen_B_cell
56123 48

ATG ...

MPH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
R1E
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    sORF
R1E
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
R1E
59446 33

TTG ...

LTS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
B_cell
55890 93

GTG ...

VML ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
56918 78

ATG ...

MAM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
R1E
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    sORF
B_cell, R1E
823165 30

TTG ...

LTS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
B_cell
60705 78

ATG ...

MEN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
BMDC
414430 87

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
BMDC
57381 60

CTG ...

LAQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
R1E
58072 33

GTG ...

VWK ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    sORF
B_cell, MEF
900819 51

ATA ...

IPQ ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    sORF
BMDC
899281 96

ATG ...

MEN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
BMDC
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    sORF
B_cell, BMDC, R1E
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
R1E
59108 69

ATG ...

MSE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
413847 33

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
BMDC
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
B_cell, R1E
146667 ENSMUST00000176637 Gnb1-208 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

60705 78

ATG ...

MEN ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
162931 105

CTG ...

LWQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Brain
61201 174

ATG ...

MLQ ...

Ribo-seq
ATG

7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5
1414 84

CTG ...

LET ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
61006 153

ATG ...

MSE ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
823165 30

TTG ...

LTS ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
59715 177

GTG ...

VML ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
683 39

GTG ...

VNL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
56123 48

ATG ...

MPH ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1017276 114

TTG ...

LSA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
60254 192

TTG ...

LSL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
56918 78

ATG ...

MAM ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
58606 45

TTG ...

LIQ ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1016885 168

GTG ...

VVS ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1017202 36

GTG ...

VAW ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
57381 60

CTG ...

LAQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
59108 69

ATG ...

MSE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
709 69

GTG ...

VPC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1229129 111

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
58139 33

ATG ...

MPS ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1015390 63

TTG ...

LGH ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
977245 183

ATG ...

MTT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1165 69

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Brain, MEF
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
60711 183

GTG ...

VLV ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1017196 48

ATG ...

MWP ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
1015809 138

GTG ...

VAA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
57696 57

CTG ...

LGI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
1555421 114

ATG ...

MMT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
60364 96

ATG ...

MLV ...

Ribo-seq
ATG

8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, v6-5
1176 60

CTG ...

LWQ ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
3T3, Brain, MEF
58650 36

CTG ...

LDT ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
511537 75

CTG ...

LMM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
MEF
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1225716 120

CTG ...

LGM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
656 33

GTG ...

VPA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1017282 156

CTG ...

LFP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
60375 207

CTG ...

LTP ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1554270 123

TTG ...

LLG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1509855 30

CTG ...

LLH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
60180 186

CTG ...

LVL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
55890 93

GTG ...

VML ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
59557 96

TTG ...

LSA ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
899281 96

ATG ...

MEN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
55634 60

CTG ...

LWY ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
59446 33

TTG ...

LTS ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1015528 39

GTG ...

VVA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
60377 213

TTG ...

LLL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
151794 72

ATG ...

MMA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Brain, MEF
984325 51

CTG ...

LRI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1058383 ENSMUST00000176308 Gnb1-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

57381 60

CTG ...

LAQ ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
55634 60

CTG ...

LWY ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
977245 183

ATG ...

MTT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
56123 48

ATG ...

MPH ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, NSC,
v6-5
1377416 99

TTG ...

LFT ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, NSC
656 33

GTG ...

VPA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC, v6-5
823165 30

TTG ...

LTS ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, NSC,
v6-5
152754 222

CTG ...

LWD ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
145516 105

TTG ...

LSS ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC
59108 69

ATG ...

MSE ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
v6-5
1508412 147

CTG ...

LAC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
1058382 231

CTG ...

LFD ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1176 60

CTG ...

LWQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
v6-5
1059141 45

GTG ...

VAT ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
154688 96

CTG ...

LHQ ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC
709 69

GTG ...

VPC ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1507985 159

GTG ...

VLN ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
56918 78

ATG ...

MAM ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC
1378620 84

TTG ...

LIC ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC
510096 132

CTG ...

LFV ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
156064 156

CTG ...

LSL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
v6-5
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1508392 156

TTG ...

LNQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
55890 93

GTG ...

VML ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
145517 ENSMUST00000175705 Gnb1-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

59108 69

ATG ...

MSE ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
Spleen_B_cell
156064 156

CTG ...

LSL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
158595 48

CTG ...

LDD ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14,
Spleen_B_cell, v6-5
154688 96

CTG ...

LHQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
156632 111

ATG ...

MCV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
154695 66

CTG ...

LSC ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14,
Spleen_B_cell, v6-5
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
Spleen_B_cell
55890 93

GTG ...

VML ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
152754 222

CTG ...

LWD ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
1015390 63

TTG ...

LGH ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
E14
145516 105

TTG ...

LSS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
159902 138

TTG ...

LVP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
157179 216

CTG ...

LRS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Spleen_B_cell,
v6-5
510096 132

CTG ...

LFV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Spleen_B_cell
151125 45

CTG ...

LLF ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Spleen_B_cell
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
900151 60

AAG ...

KGC ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
148131 105

GTG ...

VPD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
155666 120

CTG ...

LIP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
709 69

GTG ...

VPC ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, Spleen_B_cell
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
55620 ENSMUST00000105616 Gnb1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

899281 96

ATG ...

MEN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
61193 138

CTG ...

LEQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, Spleen_B_cell, Testis
58606 45

TTG ...

LIQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1232524 234

AAG ...

KNP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
59108 69

ATG ...

MSE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
56085 69

CTG ...

LPA ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, Spleen_B_cell,
Testis
59557 96

TTG ...

LSA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
58139 33

ATG ...

MPS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Testis
1015809 138

GTG ...

VAA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
57696 57

CTG ...

LGI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Testis
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
515393 213

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, Spleen_B_cell
60705 78

ATG ...

MEN ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Testis
60364 96

ATG ...

MLV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
897666 60

AGG ...

RRR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1414 84

CTG ...

LET ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
Testis
1229511 48

ATC ...

ICF ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1228169 30

ACG ...

TSL ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
60377 213

TTG ...

LLL ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
Testis
56918 78

ATG ...

MAM ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
58072 33

GTG ...

VWK ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF
61006 153

ATG ...

MSE ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, Testis
55634 60

CTG ...

LWY ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
59446 33

TTG ...

LTS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
60375 207

CTG ...

LTP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
Testis
60254 192

TTG ...

LSL ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
Spleen_B_cell, Testis
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
60180 186

CTG ...

LVL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
Spleen_B_cell, Testis
56434 111

CTG ...

LEQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, Spleen_B_cell, Testis
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
1684652 42

CTG ...

LQC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Downstream
    sORF
MEF
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, Liver, MEF
413907 192

AGG ...

RRL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
1165 69

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Spleen_B_cell
1509855 30

CTG ...

LLH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, Testis
59715 177

GTG ...

VML ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, Testis
977245 183

ATG ...

MTT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
57177 117

CTG ...

LGL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, Spleen_B_cell,
Testis
61201 174

ATG ...

MLQ ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
Testis
414430 87

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
511537 75

CTG ...

LMM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Spleen_B_cell
1233619 51

AGG ...

RRR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
60197 75

GTG ...

VGA ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, E14, Liver,
MEF, Spleen_B_cell, Testis
900819 51

ATA ...

IPQ ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
56123 48

ATG ...

MPH ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
1230772 30

ACG ...

TTT ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1225716 120

CTG ...

LGM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
823165 30

TTG ...

LTS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
900376 144

AAG ...

KGC ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
900151 60

AAG ...

KGC ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
515762 96

CTG ...

LPA ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, Spleen_B_cell
1224898 42

ATC ...

IQW ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
57381 60

CTG ...

LAQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
1232404 219

AGG ...

RRL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF
1229129 111

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
1232300 51

AGG ...

RCL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1229127 45

ATA ...

IRS ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
147540 186

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, Spleen_B_cell
1231899 114

ACG ...

TSL ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
413847 33

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
59815 144

CTG ...

LGL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, Spleen_B_cell,
Testis
55890 93

GTG ...

VML ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
1231243 39

ATC ...

ICP ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Testis
1228370 48

ATT ...

IYW ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1228194 255

GTG ...

VGA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
656 33

GTG ...

VPA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
1685517 162

TTG ...

LVR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1229369 57

GTG ...

VSW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
709 69

GTG ...

VPC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
1176 60

CTG ...

LWQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
E14, Spleen_B_cell
1230620 87

AAG ...

KNP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
897772 66

ACG ...

TTR ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1231931 57

ACG ...

TTR ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
58650 36

CTG ...

LDT ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell, Testis
60711 183

GTG ...

VLV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, Testis
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
59781 ENSMUST00000030940 Gnb1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1015390 63

TTG ...

LGH ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
160118 39

GTG ...

VGN ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12, E14,
MEF, Neutrophil, NSC,
v6-5
414430 87

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
58072 33

GTG ...

VWK ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12, MEF, Neutrophil,
NSC
984325 51

CTG ...

LRI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
59446 33

TTG ...

LTS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

8 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, C2C12, E14,
MEF, Neutrophil, NSC,
v6-5
59557 96

TTG ...

LSA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
NSC
900376 144

AAG ...

KGC ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
897666 60

AGG ...

RRR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
59780 51

GTG ...

VWE ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5
61201 174

ATG ...

MLQ ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Neutrophil, NSC
56123 48

ATG ...

MPH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
58139 33

ATG ...

MPS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil
413847 33

AAG ...

KRV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
58814 123

CTG ...

LTP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
60375 207

CTG ...

LTP ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
1414 84

CTG ...

LET ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
1017202 36

GTG ...

VAW ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
56085 69

CTG ...

LPA ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil
656 33

GTG ...

VPA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
59303 90

ATG ...

MLQ ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
58558 99

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
59715 177

GTG ...

VML ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
56797 66

TTG ...

LPL ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
61006 153

ATG ...

MSE ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
166007 90

GTG ...

VGA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC, v6-5
151794 72

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
NSC
60377 213

TTG ...

LLL ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Neutrophil, NSC
1015528 39

GTG ...

VVA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
58650 36

CTG ...

LDT ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, NSC
1165 69

ATG ...

MAW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
B_cell, NSC
161475 69

CTG ...

LPA ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil
157224 81

GTG ...

VGH ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
156495 33

ATG ...

MCG ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC, v6-5
58606 45

TTG ...

LIQ ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
161614 186

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil
60180 186

CTG ...

LVL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
709 69

GTG ...

VPC ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
55890 93

GTG ...

VML ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
57177 117

CTG ...

LGL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    sORF
    Upstream
BMDC, Brain, MEF,
Neutrophil
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
165823 66

GTG ...

VGN ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
60364 96

ATG ...

MLV ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
NSC
900497 192

AGG ...

RRL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
1017196 48

ATG ...

MWP ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, NSC
55692 102

CTG ...

LVL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
55747 129

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
823165 30

TTG ...

LTS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
413907 192

AGG ...

RRL ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12
511537 75

CTG ...

LMM ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
B_cell, NSC
161335 117

CTG ...

LGL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
    Upstream
BMDC, Brain, MEF,
Neutrophil
161515 111

CTG ...

LEQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil
1017276 114

TTG ...

LSA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
60254 192

TTG ...

LSL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
60711 183

GTG ...

VLV ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC
897538 285

AGG ...

RPR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
56434 111

CTG ...

LEQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF, Neutrophil
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
147540 186

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil
897772 66

ACG ...

TTR ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
57381 60

CTG ...

LAQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
977245 183

ATG ...

MTT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
60705 78

ATG ...

MEN ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
NSC
57696 57

CTG ...

LGI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
55619 108

TTG ...

LSL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
56918 78

ATG ...

MAM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
900817 120

AGG ...

RPR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
59108 69

ATG ...

MSE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
657 ENSMUST00000165335 Gnb1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

60711 183

GTG ...

VLV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, R1E
161614 186

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain
1015528 39

GTG ...

VVA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
656 33

GTG ...

VPA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
166007 90

GTG ...

VGA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Brain, E14,
R1E
1414 84

CTG ...

LET ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
58650 36

CTG ...

LDT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
984325 51

CTG ...

LRI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
1165 69

ATG ...

MAW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Skin_tumor
1176 60

CTG ...

LWQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
B_cell, R1E, Skin_tumor
60180 186

CTG ...

LVL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
61201 174

ATG ...

MLQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1088 54

CTG ...

LGC ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
61006 153

ATG ...

MSE ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, R1E
1015390 63

TTG ...

LGH ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
56434 111

CTG ...

LEQ ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
60254 192

TTG ...

LSL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1111 48

CTG ...

LAS ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Skin_tumor
59715 177

GTG ...

VML ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, R1E
57177 117

CTG ...

LGL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
57696 57

CTG ...

LGI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
160118 39

GTG ...

VGN ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, MEF
165823 66

GTG ...

VGN ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Brain,
MEF
161335 117

CTG ...

LGL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
60375 207

CTG ...

LTP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, R1E
151794 72

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
B_cell
161475 69

CTG ...

LPA ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
156495 33

ATG ...

MCG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Brain, MEF
147540 186

CTG ...

LRG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain
161515 111

CTG ...

LEQ ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
709 69

GTG ...

VPC ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
1509855 30

CTG ...

LLH ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
60377 213

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
57395 72

ATG ...

MPL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
56085 69

CTG ...

LPA ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Brain, E14,
R1E
59780 51

GTG ...

VWE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, Brain, MEF,
R1E
1017202 36

GTG ...

VAW ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
55973 ENSMUST00000175688 Gnb1-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

56764 63

ATG ...

MFL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
59446 33

TTG ...

LTS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
56896 153

GTG ...

VGR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis
1464974 51

TTG ...

LPC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
57520 57

CTG ...

LLQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
58606 45

TTG ...

LIQ ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
57040 54

TTG ...

LQS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
59294 57

TTG ...

LLF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
58072 33

GTG ...

VWK ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell,
Testis
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Spleen_B_cell, Testis
546147 ENSMUST00000176411 Gnb1-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1060977 60

TTG ...

LKF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
MEF, Neutrophil
57918 42

ATG ...

MLV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
3T3
57421 45

TTG ...

LDS ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    sORF
3T3
683 39

GTG ...

VNL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
3T3
55972 36

GTG ...

VCR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
3T3
3025446 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

61201 174

ATG ...

MLQ ...

Predicted
ATG

1 Samandi2017
    sORF
60364 96

ATG ...

MLV ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

137 ORFs
9 known transcripts
371 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1111 48

CTG...

LAS...

CTG sORF
Intronic
Alternative
InCDS
Overlapping
B_cell, R1E, Spleen_B_cell,
E14, MEF, Neutrophil,
v6-5, Brain, Skin_tumor,
Liver, Testis, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
60705 78

ATG...

MEN...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, v6-5, Testis,
BMDC, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
7 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
57381 60

CTG...

LAQ...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
E14, MEF, Neutrophil,
NSC, v6-5, Brain,
R1E, Testis, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
162931 105

CTG...

LWQ...

CTG Downstream
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
1414 84

CTG...

LET...

CTG sORF
Alternative
InCDS
Overlapping
B_cell, R1E, Spleen_B_cell,
Brain, E14, MEF,
v6-5, Skin_tumor, Liver,
Testis, 3T3, BMDC,
Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
61201 174

ATG...

MLQ...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5, 3T3, B_cell,
BMDC, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
7 sORFs_org_Mouse
Johnstone2016
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
3025446 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
59108 69

ATG...

MSE...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, BMDC, Brain,
Spleen_B_cell, MEF, Testis,
E14, Neutrophil, NSC,
v6-5, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
55692 102

CTG...

LVL...

CTG sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, R1E, E14,
MEF, Testis, Neutrophil,
NSC, v6-5, 3T3,
Brain, Spleen_B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
899281 96

ATG...

MEN...

ATG Alternative
InCDS
Overlapping
sORF
E14, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
1015390 63

TTG...

LGH...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, MEF, Neutrophil,
E14, NSC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
61193 138

CTG...

LEQ...

CTG sORF
Upstream
3T3, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
60711 183

GTG...

VLV...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, R1E, Brain,
E14, MEF, v6-5,
3T3, BMDC, Neutrophil,
NSC, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
160118 39

GTG...

VGN...

GTG sORF
Upstream
BMDC, C2C12, E14,
MEF, Neutrophil, NSC,
v6-5, B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
61006 153

ATG...

MSE...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
v6-5, Spleen_B_cell, Testis,
B_cell, R1E, 3T3,
BMDC, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
55619 108

TTG...

LSL...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, E14,
Testis, B_cell, R1E,
3T3, Spleen_B_cell, Neutrophil,
NSC, v6-5, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
161614 186

CTG...

LRG...

CTG sORF
Upstream
B_cell, Brain, MEF,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
414430 87

AAG...

KRV...

AAG Alternative
InCDS
Overlapping
sORF
C2C12, E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
156064 156

CTG...

LSL...

CTG Intronic
sORF
3T3, Brain, Spleen_B_cell,
E14, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
58606 45

TTG...

LIQ...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Brain, v6-5,
BMDC, Spleen_B_cell, Testis,
E14, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
1232524 234

AAG...

KNP...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
55747 129

TTG...

LLL...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, B_cell,
R1E, E14, Neutrophil,
NSC, v6-5, Testis,
3T3, Spleen_B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
823165 30

TTG...

LTS...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, Neutrophil,
NSC, v6-5, B_cell,
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
55634 60

CTG...

LWY...

CTG Intronic
sORF
InCDS
Overlapping
E14, v6-5, Testis,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
58072 33

GTG...

VWK...

GTG Alternative
Overlapping
sORF
Upstream
Intronic
E14, MEF, Neutrophil,
NSC, v6-5, Liver,
BMDC, Brain, Spleen_B_cell,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
56085 69

CTG...

LPA...

CTG sORF
Upstream
3T3, E14, Spleen_B_cell,
Testis, BMDC, MEF,
Neutrophil, B_cell, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
59557 96

TTG...

LSA...

TTG Alternative
InCDS
Overlapping
sORF
Testis, BMDC, MEF,
Neutrophil, NSC, 3T3,
Brain, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
7 sORFs_org_Mouse
977245 183

ATG...

MTT...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
MEF, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
683 39

GTG...

VNL...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
C2C12, MEF, Neutrophil,
NSC, B_cell, Brain,
E14, v6-5, BMDC,
Spleen_B_cell, Testis, Skin_tumor,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
546147 ENSMUST00000176411 Gnb1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
58139 33

ATG...

MPS...

ATG InCDS
Overlapping
sORF
E14, Testis, BMDC,
Neutrophil, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1015809 138

GTG...

VAA...

GTG Alternative
InCDS
Overlapping
sORF
MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
1015528 39

GTG...

VVA...

GTG InCDS
Overlapping
sORF
MEF, NSC, BMDC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
57696 57

CTG...

LGI...

CTG InCDS
Overlapping
sORF
E14, Testis, MEF,
NSC, Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
515393 213

CTG...

LRG...

CTG sORF
Upstream
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
57395 72

ATG...

MPL...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, MEF, Neutrophil,
NSC, Brain, Testis,
BMDC, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1088 54

CTG...

LGC...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
Spleen_B_cell, Brain, MEF,
Skin_tumor, E14, NSC,
v6-5, R1E, Liver,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
984325 51

CTG...

LRI...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Liver,
NSC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
57918 42

ATG...

MLV...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, E14, MEF,
v6-5, BMDC, Spleen_B_cell,
Testis, Liver, 3T3,
B_cell, R1E, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
546147 ENSMUST00000176411 Gnb1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
656 33

GTG...

VPA...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
Skin_tumor, MEF, NSC,
v6-5, BMDC, Brain,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
57421 45

TTG...

LDS...

TTG sORF
Alternative
Overlapping
Upstream
Intronic
B_cell, MEF, Brain,
C2C12, E14, Neutrophil,
NSC, v6-5, Liver,
3T3, BMDC, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
strong 8 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
546147 ENSMUST00000176411 Gnb1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
58558 99

GTG...

VLV...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, Testis,
BMDC, E14, Neutrophil,
NSC, v6-5, 3T3,
Spleen_B_cell, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
59446 33

TTG...

LTS...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, E14,
B_cell, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
59715 177

GTG...

VML...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
v6-5, 3T3, BMDC,
Neutrophil, NSC, B_cell,
R1E, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
59303 90

ATG...

MLQ...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
E14, MEF, Neutrophil,
NSC, v6-5, BMDC,
B_cell, R1E, 3T3,
Spleen_B_cell, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
60364 96

ATG...

MLV...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, Testis,
BMDC, Spleen_B_cell, 3T3,
Brain, Glioma, Liver,
MESC, v6-5, Neutrophil,
NSC,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
8 sORFs_org_Mouse
Johnstone2016
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
3025446 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
56764 63

ATG...

MFL...

ATG Intronic
sORF
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
56123 48

ATG...

MPH...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, BMDC,
Neutrophil, NSC, v6-5,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
709 69

GTG...

VPC...

GTG sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, R1E, Brain,
MEF, E14, Neutrophil,
BMDC, Skin_tumor, 3T3,
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
158595 48

CTG...

LDD...

CTG Intronic
sORF
3T3, Brain, E14,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
1017276 114

TTG...

LSA...

TTG Alternative
InCDS
Overlapping
sORF
Brain, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
166007 90

GTG...

VGA...

GTG Alternative
sORF
Upstream
B_cell, Brain, E14,
R1E, BMDC, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
154688 96

CTG...

LHQ...

CTG Intronic
sORF
3T3, Brain, Spleen_B_cell,
E14, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
900376 144

AAG...

KGC...

AAG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
897666 60

AGG...

RRR...

AGG Alternative
sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
59780 51

GTG...

VWE...

GTG Alternative
sORF
Upstream
3T3, BMDC, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5,
B_cell, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
55972 36

GTG...

VCR...

GTG sORF
Intronic
InCDS
Overlapping
BMDC, R1E, Spleen_B_cell,
Testis, Brain, E14,
MEF, v6-5, NSC,
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
546147 ENSMUST00000176411 Gnb1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1229511 48

ATC...

ICF...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
60254 192

TTG...

LSL...

TTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
v6-5, R1E, Spleen_B_cell,
Testis, B_cell, 3T3,
BMDC, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
5 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
413847 33

AAG...

KRV...

AAG Alternative
InCDS
Overlapping
sORF
C2C12, E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
58814 123

CTG...

LTP...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, MEF, 3T3,
Brain, Spleen_B_cell, E14,
Neutrophil, NSC, v6-5,
Testis, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
1228169 30

ACG...

TSL...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
60375 207

CTG...

LTP...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, MEF,
Neutrophil, NSC, E14,
Spleen_B_cell, Testis, B_cell,
R1E, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
1377416 99

TTG...

LFT...

TTG Intronic
sORF
E14, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
2 sORFs_org_Mouse
156632 111

ATG...

MCV...

ATG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
56918 78

ATG...

MAM...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, MEF, Testis,
R1E, E14, Neutrophil,
NSC, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
152754 222

CTG...

LWD...

CTG Intronic
sORF
E14, MEF, Neutrophil,
NSC, v6-5, 3T3,
Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
60377 213

TTG...

LLL...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, Spleen_B_cell,
Testis, 3T3, B_cell,
BMDC, Neutrophil, NSC,
R1E, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
58650 36

CTG...

LDT...

CTG InCDS
Overlapping
sORF
R1E, B_cell, BMDC,
NSC, 3T3, Brain,
E14, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
154695 66

CTG...

LSC...

CTG Intronic
sORF
3T3, Brain, E14,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
145516 105

TTG...

LSS...

TTG Intronic
sORF
E14, MEF, Neutrophil,
NSC, 3T3, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
1017202 36

GTG...

VAW...

GTG InCDS
Overlapping
sORF
BMDC, MEF, Brain,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
55890 93

GTG...

VML...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, Brain, Spleen_B_cell,
B_cell, R1E, BMDC,
MEF, Testis, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
1016885 168

GTG...

VVS...

GTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
1165 69

ATG...

MAW...

ATG Downstream
Overlapping
sORF
Skin_tumor, Spleen_B_cell, Brain,
MEF, B_cell, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1176 60

CTG...

LWQ...

CTG Downstream
Overlapping
sORF
Intronic
B_cell, R1E, Skin_tumor,
v6-5, 3T3, Brain,
MEF, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
1060977 60

TTG...

LKF...

TTG sORF
MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

546147 ENSMUST00000176411 Gnb1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
60180 186

CTG...

LVL...

CTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell, Testis,
3T3, BMDC, Neutrophil,
NSC, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
6 sORFs_org_Mouse
157224 81

GTG...

VGH...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, Liver, MEF,
Brain, B_cell, R1E,
BMDC, NSC, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
56797 66

TTG...

LPL...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, R1E, BMDC,
MEF, E14, Neutrophil,
NSC, v6-5, Brain,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
weak 6 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1508412 147

CTG...

LAC...

CTG Intronic
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1058382 231

CTG...

LFD...

CTG Intronic
sORF
E14, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
6 sORFs_org_Mouse
56434 111

CTG...

LEQ...

CTG sORF
Upstream
3T3, Spleen_B_cell, Testis,
B_cell, Brain, E14,
R1E, BMDC, MEF,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
6 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
56896 153

GTG...

VGR...

GTG Intronic
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1229129 111

ATG...

MTS...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1684652 42

CTG...

LQC...

CTG Downstream
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
151794 72

ATG...

MMA...

ATG Downstream
Overlapping
sORF
NSC, B_cell, Brain,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
413907 192

AGG...

RRL...

AGG sORF
Upstream
E14, BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1464974 51

TTG...

LPC...

TTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1509855 30

CTG...

LLH...

CTG Alternative
InCDS
Overlapping
sORF
MEF, NSC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
57177 117

CTG...

LGL...

CTG sORF
Upstream
B_cell, Brain, E14,
R1E, 3T3, Spleen_B_cell,
Testis, BMDC, MEF,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
159902 138

TTG...

LVP...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1017196 48

ATG...

MWP...

ATG InCDS
Overlapping
sORF
Brain, Glioma, Liver,
MEF, MESC, BMDC,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
Johnstone2016
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
157179 216

CTG...

LRS...

CTG Intronic
sORF
Brain, E14, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
4 sORFs_org_Mouse
1059141 45

GTG...

VAT...

GTG Intronic
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
510096 132

CTG...

LFV...

CTG Intronic
sORF
3T3, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
5 sORFs_org_Mouse
57520 57

CTG...

LLQ...

CTG Intronic
sORF
BMDC, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
511537 75

CTG...

LMM...

CTG Downstream
Overlapping
sORF
Spleen_B_cell, MEF, B_cell,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
165823 66

GTG...

VGN...

GTG sORF
Upstream
3T3, B_cell, Brain,
MEF, BMDC, C2C12,
E14, Neutrophil, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
1555421 114

ATG...

MMT...

ATG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
161335 117

CTG...

LGL...

CTG sORF
Upstream
B_cell, Brain, E14,
R1E, BMDC, MEF,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
161475 69

CTG...

LPA...

CTG sORF
Upstream
BMDC, MEF, Neutrophil,
B_cell, Brain, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
1507985 159

GTG...

VLN...

GTG Intronic
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
1233619 51

AGG...

RRR...

AGG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
156495 33

ATG...

MCG...

ATG Alternative
sORF
Upstream
BMDC, MEF, Neutrophil,
NSC, v6-5, B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
60197 75

GTG...

VGA...

GTG Alternative
Overlapping
sORF
Upstream
3T3, E14, Liver,
MEF, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
6 sORFs_org_Mouse
900819 51

ATA...

IPQ...

ATA Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
515292 ENSMUST00000177094 Gnb1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
57040 54

TTG...

LQS...

TTG Intronic
sORF
BMDC, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
1378620 84

TTG...

LIC...

TTG Intronic
sORF
E14, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
4 sORFs_org_Mouse
1230772 30

ACG...

TTT...

ACG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1225716 120

CTG...

LGM...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
151125 45

CTG...

LLF...

CTG Intronic
sORF
Brain, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
900151 60

AAG...

KGC...

AAG Alternative
InCDS
Overlapping
sORF
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
515762 96

CTG...

LPA...

CTG sORF
Upstream
3T3, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
3 sORFs_org_Mouse
1224898 42

ATC...

IQW...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1232404 219

AGG...

RRL...

AGG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1232300 51

AGG...

RCL...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
148131 105

GTG...

VPD...

GTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1229127 45

ATA...

IRS...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
900497 192

AGG...

RRL...

AGG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
59294 57

TTG...

LLF...

TTG Intronic
sORF
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55973 ENSMUST00000175688 Gnb1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
147540 186

CTG...

LRG...

CTG sORF
Upstream
3T3, Spleen_B_cell, B_cell,
Brain, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1231899 114

ACG...

TSL...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
161515 111

CTG...

LEQ...

CTG sORF
Upstream
B_cell, Brain, E14,
R1E, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

657 ENSMUST00000165335 Gnb1-203 protein_coding Ribo-seq
5 sORFs_org_Mouse
59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
155666 120

CTG...

LIP...

CTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

145517 ENSMUST00000175705 Gnb1-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1017282 156

CTG...

LFP...

CTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
59815 144

CTG...

LGL...

CTG sORF
Upstream
3T3, E14, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
1231243 39

ATC...

ICP...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1554270 123

TTG...

LLG...

TTG Alternative
InCDS
Overlapping
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

146667 ENSMUST00000176637 Gnb1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
1228370 48

ATT...

IYW...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1228194 255

GTG...

VGA...

GTG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1685517 162

TTG...

LVR...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1508392 156

TTG...

LNQ...

TTG Intronic
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1058383 ENSMUST00000176308 Gnb1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
897538 285

AGG...

RPR...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
897772 66

ACG...

TTR...

ACG Alternative
sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1229369 57

GTG...

VSW...

GTG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1230620 87

AAG...

KNP...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1231931 57

ACG...

TTR...

ACG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55620 ENSMUST00000105616 Gnb1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
900817 120

AGG...

RPR...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59781 ENSMUST00000030940 Gnb1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5