Transcript 59781 | MetamORF

Transcript

ID CARD

MetamORF ID

59781

ENSMUST00000030940

Name

Gnb1-201

Strand

Biotype

protein_coding

Start-end positions

155491370-155559269

CDS Start-stop positions

155527453-155557277

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:14688

Aliases

AA409223,
C77571, ENSMUSG00000029064, Gnb-1,
Gnb1, MGI:95781, NCBI:14688,
OFF:Gnb1

Chr 4

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1015390	63	TTG ...	LGH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil
160118	39	GTG ...	VGN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14, MEF, Neutrophil, NSC, v6-5
414430	87	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
58072	33	GTG ...	VWK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, v6-5
683	39	GTG ...	VNL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF, Neutrophil, NSC
984325	51	CTG ...	LRI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
59446	33	TTG ...	LTS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC
57421	45	TTG ...	LDS ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, C2C12, E14, MEF, Neutrophil, NSC, v6-5
59557	96	TTG ...	LSA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC
900376	144	AAG ...	KGC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
897666	60	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
59780	51	GTG ...	VWE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
61201	174	ATG ...	MLQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC
56123	48	ATG ...	MPH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
58139	33	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Neutrophil
413847	33	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
58814	123	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
60375	207	CTG ...	LTP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
1414	84	CTG ...	LET ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
1017202	36	GTG ...	VAW ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
56085	69	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	BMDC, MEF, Neutrophil
656	33	GTG ...	VPA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
59303	90	ATG ...	MLQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
58558	99	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
59715	177	GTG ...	VML ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
56797	66	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
61006	153	ATG ...	MSE ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
166007	90	GTG ...	VGA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil, NSC, v6-5
151794	72	ATG ...	MMA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
60377	213	TTG ...	LLL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC
1015528	39	GTG ...	VVA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
58650	36	CTG ...	LDT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, NSC
1165	69	ATG ...	MAW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, NSC
161475	69	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	BMDC, MEF, Neutrophil
157224	81	GTG ...	VGH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
156495	33	ATG ...	MCG ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil, NSC, v6-5
58606	45	TTG ...	LIQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
161614	186	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
60180	186	CTG ...	LVL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
709	69	GTG ...	VPC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
55890	93	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
57177	117	CTG ...	LGL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, Neutrophil
57395	72	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
165823	66	GTG ...	VGN ...	Ribo-seq	GTG		10	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
55972	36	GTG ...	VCR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
60364	96	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC
900497	192	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
1017196	48	ATG ...	MWP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, NSC
55692	102	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
55747	129	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
823165	30	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
413907	192	AGG ...	RRL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12
511537	75	CTG ...	LMM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, NSC
161335	117	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, Neutrophil
161515	111	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
1017276	114	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
60254	192	TTG ...	LSL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
60711	183	GTG ...	VLV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC
897538	285	AGG ...	RPR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
57918	42	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
56434	111	CTG ...	LEQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	BMDC, MEF, Neutrophil
1111	48	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
147540	186	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
897772	66	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
57381	60	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
977245	183	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1088	54	CTG ...	LGC ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
60705	78	ATG ...	MEN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC
57696	57	CTG ...	LGI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
55619	108	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
56918	78	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
900817	120	AGG ...	RPR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
59108	69	ATG ...	MSE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF

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