Transcript 55620 | MetamORF

Transcript

ID CARD

MetamORF ID

55620

ENSMUST00000105616

Name

Gnb1-202

Strand

Biotype

protein_coding

Start-end positions

155491364-155559269

CDS Start-stop positions

155527453-155557277

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:14688

Aliases

AA409223,
C77571, ENSMUSG00000029064, Gnb-1,
Gnb1, MGI:95781, NCBI:14688,
OFF:Gnb1

Chr 4

ORFs

86 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899281	96	ATG ...	MEN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
61193	138	CTG ...	LEQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell, Testis
58606	45	TTG ...	LIQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1232524	234	AAG ...	KNP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
59108	69	ATG ...	MSE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
56085	69	CTG ...	LPA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	3T3, E14, Spleen_B_cell, Testis
59557	96	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
58139	33	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Testis
1015809	138	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
57696	57	CTG ...	LGI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Testis
55619	108	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
515393	213	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
60705	78	ATG ...	MEN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
60364	96	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
897666	60	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1414	84	CTG ...	LET ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Testis
1229511	48	ATC ...	ICF ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1228169	30	ACG ...	TSL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
60377	213	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, Testis
56918	78	ATG ...	MAM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
58072	33	GTG ...	VWK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF
61006	153	ATG ...	MSE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, Testis
55634	60	CTG ...	LWY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
59446	33	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
157224	81	GTG ...	VGH ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF
60375	207	CTG ...	LTP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, Testis
60254	192	TTG ...	LSL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell, Testis
58558	99	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
60180	186	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell, Testis
56434	111	CTG ...	LEQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell, Testis
58814	123	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
57918	42	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF
57395	72	ATG ...	MPL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
1684652	42	CTG ...	LQC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
57421	45	TTG ...	LDS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF
413907	192	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
55692	102	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
1165	69	ATG ...	MAW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream Overlapping sORF	Spleen_B_cell
1509855	30	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1111	48	CTG ...	LAS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Testis
59715	177	GTG ...	VML ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, Testis
977245	183	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
57177	117	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	3T3, E14, Spleen_B_cell, Testis
61201	174	ATG ...	MLQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, Testis
414430	87	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
511537	75	CTG ...	LMM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	Spleen_B_cell
1233619	51	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
60197	75	GTG ...	VGA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, Liver, MEF, Spleen_B_cell, Testis
900819	51	ATA ...	IPQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
55747	129	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
56123	48	ATG ...	MPH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
1230772	30	ACG ...	TTT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1225716	120	CTG ...	LGM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
823165	30	TTG ...	LTS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
900376	144	AAG ...	KGC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
900151	60	AAG ...	KGC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
515762	96	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, E14, Spleen_B_cell
1224898	42	ATC ...	IQW ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
57381	60	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
1232404	219	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
55972	36	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
1229129	111	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
56797	66	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
1232300	51	AGG ...	RCL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1229127	45	ATA ...	IRS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
147540	186	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
1231899	114	ACG ...	TSL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
413847	33	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
59815	144	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	3T3, E14, Spleen_B_cell, Testis
55890	93	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
1088	54	CTG ...	LGC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1231243	39	ATC ...	ICP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
59303	90	ATG ...	MLQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis
1228370	48	ATT ...	IYW ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1228194	255	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
656	33	GTG ...	VPA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1685517	162	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1229369	57	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
709	69	GTG ...	VPC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
1176	60	CTG ...	LWQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	E14, Spleen_B_cell
1230620	87	AAG ...	KNP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
897772	66	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1231931	57	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
58650	36	CTG ...	LDT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell, Testis
60711	183	GTG ...	VLV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, Testis
683	39	GTG ...	VNL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF

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