Transcript 145517

Transcript

ID CARD

MetamORF ID

145517

ENSMUST00000175705

Name

Gnb1-205

Strand

Biotype

retained_intron

Start-end positions

155542928-155555205

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:14688

Aliases

AA409223,
C77571, ENSMUSG00000029064, Gnb-1,
Gnb1, MGI:95781, NCBI:14688,
OFF:Gnb1

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59108	69	ATG ...	MSE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
156064	156	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
1088	54	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
158595	48	CTG ...	LDD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell, v6-5
154688	96	CTG ...	LHQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
1111	48	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
156632	111	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
154695	66	CTG ...	LSC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell, v6-5
58814	123	CTG ...	LTP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
55890	93	GTG ...	VML ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
152754	222	CTG ...	LWD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
56797	66	TTG ...	LPL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1015390	63	TTG ...	LGH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
145516	105	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
159902	138	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
157179	216	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, v6-5
510096	132	CTG ...	LFV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
58558	99	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
55692	102	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
59303	90	ATG ...	MLQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
151125	45	CTG ...	LLF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell
55619	108	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
900151	60	AAG ...	KGC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
148131	105	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
157224	81	GTG ...	VGH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
55747	129	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
155666	120	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
709	69	GTG ...	VPC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
57395	72	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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