Transcript 55973 | MetamORF

Transcript

ID CARD

MetamORF ID

55973

ENSMUST00000175688

Name

Gnb1-204

Strand

Biotype

retained_intron

Start-end positions

155522636-155541214

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:14688

Aliases

AA409223,
C77571, ENSMUSG00000029064, Gnb-1,
Gnb1, MGI:95781, NCBI:14688,
OFF:Gnb1

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56764	63	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
59446	33	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
55972	36	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
57918	42	ATG ...	MLV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
683	39	GTG ...	VNL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
56896	153	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1464974	51	TTG ...	LPC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
57520	57	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
58606	45	TTG ...	LIQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
57040	54	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis
59294	57	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
58072	33	GTG ...	VWK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell, Testis
57421	45	TTG ...	LDS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell, Testis

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