Metam
ORF

Logo

Gene

Gene

ID CARD

ID

HGNC:167

Aliases

ACTR1A
ARP1, Arp1A, ENSG00000138107
HGNC:167, NCBI:10121, OFF:ACTR1A

Chromosome

10

Transcripts

116 ORFs
6 known transcripts
114 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

91 ENST00000480947 ACTR1A-203 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898561 174

GGA ...

GTS ...

Ribo-seq
GGA

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1719482 156

ATG ...

MLC ...

Ribo-seq
ATG

weak

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
105 117

CTG ...

LTE ...

Ribo-seq
CTG

29 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
98497 90

CTG ...

LRK ...

Ribo-seq
CTG

weak

2 sORFs_org_Human
    ncRNA
    sORF
guo_2014, HEK293
1719480 153

CTG ...

LCP ...

Ribo-seq
CTG

moderate

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
524765 42

TTG ...

LER ...

Ribo-seq
TTG

strong

6 sORFs_org_Human
    ncRNA
    sORF
guo_2014, HEK293T, HeLa,
U2OS
107 123

GTG ...

VLL ...

Ribo-seq
GTG

29 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
97 237

GTG ...

VTV ...

Ribo-seq
GTG

13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HeLa,
HFF, LCL, MDA-MB-231,
RPE-1
93 216

GTG ...

VVL ...

Ribo-seq
GTG

strong

20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
405168 231

GGC ...

GRT ...

Ribo-seq
GGC

moderate

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1719486 174

CTG ...

LGM ...

Ribo-seq
CTG

strong

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
101 51

ATG ...

MCP ...

Ribo-seq
ATG

17 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
1719484 168

ATG ...

MES ...

Ribo-seq
ATG

strong

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
95 84

TTG ...

LLQ ...

Ribo-seq
TTG

11 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HEK293T, MDA-MB-231, RPE-1
405166 207

GAT ...

DSG ...

Ribo-seq
GAT

weak

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1719476 132

TTG ...

LPC ...

Ribo-seq
TTG

moderate

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
103 78

CTG ...

LPK ...

Ribo-seq
CTG

20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
90 213

GTG ...

VLD ...

Ribo-seq
GTG

moderate

19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
717 282

GTG ...

VPA ...

Ribo-seq
GTG

23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1, U2OS
898555 237

GCT ...

ATG ...

Ribo-seq
GCT

weak

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98499 102

CTG ...

LRL ...

Ribo-seq
CTG

weak

4 sORFs_org_Human
    ncRNA
    sORF
Flp-In_T-REx-293, guo_2014, HEK293
98503 210

CTG ...

LDS ...

Ribo-seq
CTG

strong

16 sORFs_org_Human
    ncRNA
    sORF
Blood, Brain, guo_2014,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
U2OS
898557 30

ATC ...

ISM ...

Ribo-seq
ATC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898563 57

GCA ...

AFG ...

Ribo-seq
GCA

3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
99 45

GTG ...

VPA ...

Ribo-seq
GTG

24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
900420 267

ATC ...

ISM ...

Ribo-seq
ATC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1719478 141

ATG ...

MRA ...

Ribo-seq
ATG

weak

4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
405170 72

GGA ...

GTT ...

Ribo-seq
GGA

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1129209 45

ATG ...

MSI ...

Ribo-seq
ATG

1 sORFs_org_Human
    ncRNA
    sORF
HEK293
98501 180

GTG ...

VPI ...

Ribo-seq
GTG

moderate

10 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
hES, HFF, Jurkat,
U2OS
898559 147

GAC ...

DLQ ...

Ribo-seq
GAC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898565 84

TCG ...

SSR ...

Ribo-seq
TCG

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
405164 126

GCG ...

AGR ...

Ribo-seq
GCG

strong

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
898552 144

ATC ...

IMR ...

Ribo-seq
ATC

weak

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
80 ENST00000494549 ACTR1A-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898542 75

TTT ...

FKK ...

Ribo-seq
TTT

moderate

2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
898546 42

TCA ...

SEV ...

Ribo-seq
TCA

2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
405158 36

CCT ...

PQE ...

Ribo-seq
CCT

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
98493 165

CTG ...

LVF ...

Ribo-seq
CTG

5 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293, HFF
86 219

TTG ...

LLF ...

Ribo-seq
TTG

13 sORFs_org_Human
    ncRNA
    sORF
BJ, Brain, guo_2014,
HEK293, hES, HFF,
RPE-1
277925 33

TTG ...

LPI ...

Ribo-seq
TTG

4 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293, LCL
934667 48

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Human
    ncRNA
    sORF
Brain
898550 204

GAT ...

DLI ...

Ribo-seq
GAT

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98491 162

GTG ...

VFA ...

Ribo-seq
GTG

5 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293, HFF
79 84

CTG ...

LDT ...

Ribo-seq
CTG

moderate

20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
U2OS
405156 30

GAG ...

ERL ...

Ribo-seq
GAG

2 sORFs_org_Human
    ncRNA
    sORF
HCT116, HEK293
898548 174

CAC ...

HEV ...

Ribo-seq
CAC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
84 201

TTG ...

LIG ...

Ribo-seq
TTG

10 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
hES, HFF, RPE-1
405160 201

AGT ...

SEV ...

Ribo-seq
AGT

1 sORFs_org_Human
    ncRNA
    sORF
HCT116
898544 132

CTG ...

LRR ...

Ribo-seq
CTG

2 sORFs_org_Human
    ncRNA
    sORF
Brain, Jurkat
88 51

TTG ...

LVL ...

Ribo-seq
TTG

23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
82 45

CTG ...

LHL ...

Ribo-seq
CTG

9 sORFs_org_Human
    ncRNA
    sORF
HAP1, HEK293, HeLa,
LCL, RPE-1
1817218 87

CTG ...

LEV ...

Ribo-seq
CTG

1 sORFs_org_Human
    ncRNA
    sORF
HeLa
110 ENST00000481044 ACTR1A-204 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898567 243

ATC ...

IRY ...

Ribo-seq
ATC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
125 57

GTG ...

VIK ...

Ribo-seq
GTG

23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
118 81

GTG ...

VWA ...

Ribo-seq
GTG

21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
1296197 171

CTG ...

LLS ...

Ribo-seq
CTG

1 sORFs_org_Human
    ncRNA
    sORF
HEK293T
1817222 33

CTG ...

LLP ...

Ribo-seq
CTG

moderate

3 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, MDA-MB-231
1301449 108

ATC ...

IAN ...

Ribo-seq
ATC

1 sORFs_org_Human
    ncRNA
    sORF
BJ
898581 174

GTG ...

VIR ...

Ribo-seq
GTG

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898571 36

AAG ...

KAT ...

Ribo-seq
AAG

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898579 48

GAT ...

DPQ ...

Ribo-seq
GAT

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898569 123

GAG ...

EGC ...

Ribo-seq
GAG

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898591 114

GAT ...

DVI ...

Ribo-seq
GAT

3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
898577 75

GCC ...

ADP ...

Ribo-seq
GCC

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1817224 54

TTG ...

LLG ...

Ribo-seq
TTG

3 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, hES
116 57

GTG ...

VSW ...

Ribo-seq
GTG

20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
120 93

CTG ...

LSF ...

Ribo-seq
CTG

16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, RPE-1
898585 33

CGA ...

RQR ...

Ribo-seq
CGA

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98516 147

CTG ...

LFS ...

Ribo-seq
CTG

16 sORFs_org_Human
    ncRNA
    sORF
BJ, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
RPE-1
109 90

ATG ...

MAS ...

Ribo-seq
ATG

18 sORFs_org_Human
    ncRNA
    sORF
Brain, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, RPE-1
98520 174

GTG ...

VGR ...

Ribo-seq
GTG

3 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293
114 39

TTG ...

LKA ...

Ribo-seq
TTG

17 sORFs_org_Human
    ncRNA
    sORF
Blood, Brain, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
898583 189

AAG ...

KLV ...

Ribo-seq
AAG

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
112 141

GTG ...

VEP ...

Ribo-seq
GTG

6 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
HEK293T, HeLa
898589 54

CGC ...

RQP ...

Ribo-seq
CGC

3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
898575 33

CAA ...

QAR ...

Ribo-seq
CAA

strong

1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898587 90

GTG ...

VID ...

Ribo-seq
GTG

2 sORFs_org_Human
    ncRNA
    sORF
BJ, Jurkat
898573 48

CAG ...

QEP ...

Ribo-seq
CAG

3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
713 ENST00000487599 ACTR1A-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1817197 30

CTG ...

LHT ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817192 48

CTG ...

LEK ...

Ribo-seq
CTG

strong

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817182 45

ATG ...

MCE ...

Ribo-seq
ATG

moderate

1 sORFs_org_Human
    Downstream
    sORF
HeLa
721 282

CTG ...

LPK ...

Ribo-seq
CTG

20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
900424 186

CAG ...

QEP ...

Ribo-seq
CAG

3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa, Jurkat, THP-1
405771 135

CCT ...

PQE ...

Ribo-seq
CCT

1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116
723 177

TTG ...

LKA ...

Ribo-seq
TTG

22 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
1817190 57

CTG ...

LQF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817209 66

ATG ...

MRV ...

Ribo-seq
ATG

weak

2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1984479 57

ATG ...

MSI ...

Ribo-seq
ATG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa
1817206 60

GTG ...

VPC ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
99397 102

ATG ...

MAS ...

Ribo-seq
ATG

19 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, RPE-1
719 255

ATG ...

MCP ...

Ribo-seq
ATG

18 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Brain_tumor, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1
405769 129

GAG ...

ERL ...

Ribo-seq
GAG

3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116, HEK293, Jurkat
1817186 66

CTG ...

LTR ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817204 36

GTG ...

VAL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817194 60

GTG ...

VPL ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
727 219

GTG ...

VWA ...

Ribo-seq
GTG

23 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
99399 159

CTG ...

LFS ...

Ribo-seq
CTG

17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
RPE-1
900422 69

GCA ...

AFG ...

Ribo-seq
GCA

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
729 231

CTG ...

LSF ...

Ribo-seq
CTG

22 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
1817202 30

CTG ...

LGP ...

Ribo-seq
CTG

strong

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817211 72

GTG ...

VHM ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
725 195

GTG ...

VSW ...

Ribo-seq
GTG

22 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1
1817200 39

CTG ...

LGP ...

Ribo-seq
CTG

strong

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817213 78

GTG ...

VCV ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
3303892 999

ATG ...

MES ...

Ribo-seq
ATG

1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
900426 213

GCC ...

ADP ...

Ribo-seq
GCC

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
712 150

TTG ...

LQI ...

Ribo-seq
TTG

27 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
1817184 66

GTG ...

VWA ...

Ribo-seq
GTG

weak

1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817188 42

TTG ...

LPF ...

Ribo-seq
TTG

moderate

1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
715 225

ATG ...

MGR ...

Ribo-seq
ATG

10 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Brain, HEK293, HeLa,
hES, HFF
1847 ENST00000470322 ACTR1A-202 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1846 144

TTG ...

LER ...

Ribo-seq
TTG

18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
1849 132

GTG ...

VKA ...

Ribo-seq
GTG

16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
281799 54

TTG ...

LSS ...

Ribo-seq
TTG

13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
Jurkat, LCL, MDA-MB-231,
RPE-1