Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

91

ID

ENST00000480947

Name

ACTR1A-203

Strand

-

Biotype

processed_transcript

Start-end positions

102484074-102488233

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

GGC ...

Gene

ID

HGNC:167

Aliases

ACTR1A,
ARP1, Arp1A, ENSG00000138107,
HGNC:167, NCBI:10121, OFF:ACTR1A


Chr 10

ORFs

34 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898561 174

GGA ...

GTS ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1719482 156

ATG ...

MLC ...

Ribo-seq
ATG weak 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
105 117

CTG ...

LTE ...

Ribo-seq
CTG 29 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
98497 90

CTG ...

LRK ...

Ribo-seq
CTG weak 2 sORFs_org_Human
    ncRNA
    sORF
guo_2014, HEK293
1719480 153

CTG ...

LCP ...

Ribo-seq
CTG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
524765 42

TTG ...

LER ...

Ribo-seq
TTG strong 6 sORFs_org_Human
    ncRNA
    sORF
guo_2014, HEK293T, HeLa,
U2OS
107 123

GTG ...

VLL ...

Ribo-seq
GTG 29 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
97 237

GTG ...

VTV ...

Ribo-seq
GTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HeLa,
HFF, LCL, MDA-MB-231,
RPE-1
93 216

GTG ...

VVL ...

Ribo-seq
GTG strong 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
405168 231

GGC ...

GRT ...

Ribo-seq
GGC moderate 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1719486 174

CTG ...

LGM ...

Ribo-seq
CTG strong 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
101 51

ATG ...

MCP ...

Ribo-seq
ATG 17 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
1719484 168

ATG ...

MES ...

Ribo-seq
ATG strong 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
95 84

TTG ...

LLQ ...

Ribo-seq
TTG 11 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HEK293T, MDA-MB-231, RPE-1
405166 207

GAT ...

DSG ...

Ribo-seq
GAT weak 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1719476 132

TTG ...

LPC ...

Ribo-seq
TTG moderate 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
103 78

CTG ...

LPK ...

Ribo-seq
CTG 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
90 213

GTG ...

VLD ...

Ribo-seq
GTG moderate 19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
717 282

GTG ...

VPA ...

Ribo-seq
GTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1, U2OS
898555 237

GCT ...

ATG ...

Ribo-seq
GCT weak 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98499 102

CTG ...

LRL ...

Ribo-seq
CTG weak 4 sORFs_org_Human
    ncRNA
    sORF
Flp-In_T-REx-293, guo_2014, HEK293
98503 210

CTG ...

LDS ...

Ribo-seq
CTG strong 16 sORFs_org_Human
    ncRNA
    sORF
Blood, Brain, guo_2014,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
U2OS
898557 30

ATC ...

ISM ...

Ribo-seq
ATC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898563 57

GCA ...

AFG ...

Ribo-seq
GCA 3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
99 45

GTG ...

VPA ...

Ribo-seq
GTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
900420 267

ATC ...

ISM ...

Ribo-seq
ATC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1719478 141

ATG ...

MRA ...

Ribo-seq
ATG weak 4 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
405170 72

GGA ...

GTT ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1129209 45

ATG ...

MSI ...

Ribo-seq
ATG 1 sORFs_org_Human
    ncRNA
    sORF
HEK293
98501 180

GTG ...

VPI ...

Ribo-seq
GTG moderate 10 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
hES, HFF, Jurkat,
U2OS
898559 147

GAC ...

DLQ ...

Ribo-seq
GAC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898565 84

TCG ...

SSR ...

Ribo-seq
TCG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
405164 126

GCG ...

AGR ...

Ribo-seq
GCG strong 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
898552 144

ATC ...

IMR ...

Ribo-seq
ATC weak 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS