Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

110

ID

ENST00000481044

Name

ACTR1A-204

Strand

-

Biotype

processed_transcript

Start-end positions

102483014-102502654

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

CTC ...

Gene

ID

HGNC:167

Aliases

ACTR1A,
ARP1, Arp1A, ENSG00000138107,
HGNC:167, NCBI:10121, OFF:ACTR1A


Chr 10

ORFs

26 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898567 243

ATC ...

IRY ...

Ribo-seq
ATC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
125 57

GTG ...

VIK ...

Ribo-seq
GTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1
118 81

GTG ...

VWA ...

Ribo-seq
GTG 21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
1296197 171

CTG ...

LLS ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HEK293T
1817222 33

CTG ...

LLP ...

Ribo-seq
CTG moderate 3 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, MDA-MB-231
1301449 108

ATC ...

IAN ...

Ribo-seq
ATC 1 sORFs_org_Human
    ncRNA
    sORF
BJ
898581 174

GTG ...

VIR ...

Ribo-seq
GTG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898571 36

AAG ...

KAT ...

Ribo-seq
AAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898579 48

GAT ...

DPQ ...

Ribo-seq
GAT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898569 123

GAG ...

EGC ...

Ribo-seq
GAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898591 114

GAT ...

DVI ...

Ribo-seq
GAT 3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
898577 75

GCC ...

ADP ...

Ribo-seq
GCC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1817224 54

TTG ...

LLG ...

Ribo-seq
TTG 3 sORFs_org_Human
    ncRNA
    sORF
HEK293, HeLa, hES
116 57

GTG ...

VSW ...

Ribo-seq
GTG 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1
120 93

CTG ...

LSF ...

Ribo-seq
CTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, RPE-1
898585 33

CGA ...

RQR ...

Ribo-seq
CGA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98516 147

CTG ...

LFS ...

Ribo-seq
CTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
RPE-1
109 90

ATG ...

MAS ...

Ribo-seq
ATG 18 sORFs_org_Human
    ncRNA
    sORF
Brain, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, RPE-1
98520 174

GTG ...

VGR ...

Ribo-seq
GTG 3 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293
114 39

TTG ...

LKA ...

Ribo-seq
TTG 17 sORFs_org_Human
    ncRNA
    sORF
Blood, Brain, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
898583 189

AAG ...

KLV ...

Ribo-seq
AAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
112 141

GTG ...

VEP ...

Ribo-seq
GTG 6 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
HEK293T, HeLa
898589 54

CGC ...

RQP ...

Ribo-seq
CGC 3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
898575 33

CAA ...

QAR ...

Ribo-seq
CAA strong 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
898587 90

GTG ...

VID ...

Ribo-seq
GTG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, Jurkat
898573 48

CAG ...

QEP ...

Ribo-seq
CAG 3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS