Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1847

ID

ENST00000470322

Name

ACTR1A-202

Strand

-

Biotype

processed_transcript

Start-end positions

102479230-102483680

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

TTT ...

Gene

ID

HGNC:167

Aliases

ACTR1A,
ARP1, Arp1A, ENSG00000138107,
HGNC:167, NCBI:10121, OFF:ACTR1A


Chr 10

ORFs

3 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1846 144

TTG ...

LER ...

Ribo-seq
TTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
1849 132

GTG ...

VKA ...

Ribo-seq
GTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
281799 54

TTG ...

LSS ...

Ribo-seq
TTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
Jurkat, LCL, MDA-MB-231,
RPE-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS