Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

80

ID

ENST00000494549

Name

ACTR1A-206

Strand

-

Biotype

processed_transcript

Start-end positions

102480795-102484374

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

ACG ...

Gene

ID

HGNC:167

Aliases

ACTR1A,
ARP1, Arp1A, ENSG00000138107,
HGNC:167, NCBI:10121, OFF:ACTR1A


Chr 10

ORFs

18 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

898542 75

TTT ...

FKK ...

Ribo-seq
TTT moderate 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
898546 42

TCA ...

SEV ...

Ribo-seq
TCA 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
405158 36

CCT ...

PQE ...

Ribo-seq
CCT 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
98493 165

CTG ...

LVF ...

Ribo-seq
CTG 5 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293, HFF
86 219

TTG ...

LLF ...

Ribo-seq
TTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Brain, guo_2014,
HEK293, hES, HFF,
RPE-1
277925 33

TTG ...

LPI ...

Ribo-seq
TTG 4 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293, LCL
934667 48

CTG ...

LAL ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
Brain
898550 204

GAT ...

DLI ...

Ribo-seq
GAT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
98491 162

GTG ...

VFA ...

Ribo-seq
GTG 5 sORFs_org_Human
    ncRNA
    sORF
Brain, HEK293, HFF
79 84

CTG ...

LDT ...

Ribo-seq
CTG moderate 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
U2OS
405156 30

GAG ...

ERL ...

Ribo-seq
GAG 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, HEK293
898548 174

CAC ...

HEV ...

Ribo-seq
CAC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
84 201

TTG ...

LIG ...

Ribo-seq
TTG 10 sORFs_org_Human
    ncRNA
    sORF
Brain, guo_2014, HEK293,
hES, HFF, RPE-1
405160 201

AGT ...

SEV ...

Ribo-seq
AGT 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
898544 132

CTG ...

LRR ...

Ribo-seq
CTG 2 sORFs_org_Human
    ncRNA
    sORF
Brain, Jurkat
88 51

TTG ...

LVL ...

Ribo-seq
TTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
82 45

CTG ...

LHL ...

Ribo-seq
CTG 9 sORFs_org_Human
    ncRNA
    sORF
HAP1, HEK293, HeLa,
LCL, RPE-1
1817218 87

CTG ...

LEV ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HeLa

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS