Transcript 713 | MetamORF

Transcript

ID CARD

MetamORF ID

713

ENST00000487599

Name

ACTR1A-205

Strand

Biotype

protein_coding

Start-end positions

102479237-102502678

CDS Start-stop positions

102480933-102502647

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:167

Aliases

ACTR1A,
ARP1, Arp1A, ENSG00000138107,
HGNC:167, NCBI:10121, OFF:ACTR1A

Chr 10

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1817197	30	CTG ...	LHT ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817192	48	CTG ...	LEK ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817182	45	ATG ...	MCE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
721	282	CTG ...	LPK ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
900424	186	CAG ...	QEP ...	Ribo-seq	CAG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, Jurkat, THP-1
405771	135	CCT ...	PQE ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116
723	177	TTG ...	LKA ...	Ribo-seq	TTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817190	57	CTG ...	LQF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817209	66	ATG ...	MRV ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1984479	57	ATG ...	MSI ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
1817206	60	GTG ...	VPC ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
99397	102	ATG ...	MAS ...	Ribo-seq	ATG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1
719	255	ATG ...	MCP ...	Ribo-seq	ATG		18	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
405769	129	GAG ...	ERL ...	Ribo-seq	GAG		3	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HEK293, Jurkat
1817186	66	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1817204	36	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817194	60	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
727	219	GTG ...	VWA ...	Ribo-seq	GTG		23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
99399	159	CTG ...	LFS ...	Ribo-seq	CTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1
900422	69	GCA ...	AFG ...	Ribo-seq	GCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
729	231	CTG ...	LSF ...	Ribo-seq	CTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817202	30	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817211	72	GTG ...	VHM ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
725	195	GTG ...	VSW ...	Ribo-seq	GTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1817200	39	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817213	78	GTG ...	VCV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3303892	999	ATG ...	MES ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
900426	213	GCC ...	ADP ...	Ribo-seq	GCC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
712	150	TTG ...	LQI ...	Ribo-seq	TTG		27	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1817184	66	GTG ...	VWA ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1817188	42	TTG ...	LPF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
715	225	ATG ...	MGR ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative Downstream Overlapping sORF	Brain, HEK293, HeLa, hES, HFF

Export data