Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:240832

Aliases

1110020D10Rik
15kDa, A130072J07, AA103493
AW060462, AW610675, C77739
ENSMUSG00000050565, Ifrg15, Lull1
MGI:3582695, NCBI:240832, OFF:Tor1aip2
Tor1aip2

Chromosome

1

Transcripts

145 ORFs
8 known transcripts
295 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

771834 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

5 sORFs_org_Mouse
    sORF
    Upstream
Liver, MEF, Neutrophil,
v6-5
1693906 45

CTG ...

LGV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
707760 165

CTG ...

LPD ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
1695034 120

GTG ...

VAA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
294469 75

ATG ...

MGS ...

Ribo-seq
ATG

moderate

8 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, E14, Liver,
Neutrophil, NSC, R1E,
v6-5
980640 36

CTG ...

LLE ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1264616 60

CTG ...

LIL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver, MEF
144751 138

CTG ...

LSR ...

Ribo-seq
CTG

11 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, v6-5
598239 123

CTG ...

LSI ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, R1E, v6-5
786509 51

CTG ...

LEE ...

Ribo-seq
CTG

strong

5 sORFs_org_Mouse
    sORF
    Upstream
Liver, MEF, Neutrophil,
v6-5
645334 69

CTG ...

LKT ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
1292393 54

CTG ...

LTV ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
1680939 72

TTG ...

LQT ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
MEF
738273 162

CTG ...

LTV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF,
v6-5
364427 69

GTG ...

VVP ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Liver, MEF
716959 54

ATG ...

MAR ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
41890 57

TTG ...

LEP ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, Neutrophil,
NSC, R1E, v6-5
649798 147

ATG ...

MST ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
667406 72

TTG ...

LLK ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
34843 66

ATG ...

MSL ...

Ribo-seq
ATG

moderate

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, Neutrophil,
NSC, R1E, v6-5
1736143 39

ATG ...

MRT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
462657 93

CTG ...

LWS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver, MEF
733072 201

CTG ...

LWS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Liver, MEF,
v6-5
794845 36

CTG ...

LSR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
v6-5
415252 168

CTG ...

LIL ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, C2C12, Liver,
MEF, v6-5
729376 90

TTG ...

LLL ...

Ribo-seq
TTG

weak

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, NSC,
R1E, v6-5
1181662 153

AAG ...

KLM ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
661744 45

CTG ...

LRA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
692496 87

CTG ...

LVR ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
734497 228

GTG ...

VAA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, E14, MEF,
R1E, v6-5
697996 78

ATG ...

MPR ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
670675 33

CTG ...

LEV ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1173587 177

GTG ...

VVP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, v6-5
1677716 57

CTG ...

LPW ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
728665 81

CTG ...

LLS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

596986 39

CTG ...

LST ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
952282 117

ATC ...

IHQ ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
21276 36

TTG ...

LPS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
740638 153

CTG ...

LGS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, MEF
929031 36

ATG ...

MET ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    sORF
BMDC, Glioma, Liver,
MEF, MESC
958194 156

CTG ...

LED ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
686485 141

GTG ...

VLL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
714947 81

TTG ...

LCC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
729785 141

CTG ...

LTV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
961264 57

ATC ...

IHF ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
30825 39

GTG ...

VQA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
657883 72

TTG ...

LKK ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
413963 63

ATC ...

IEV ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    sORF
    Upstream
E14
32906 42

TTG ...

LLC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
698928 141

CTG ...

LHQ ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC
692112 57

GTG ...

VCD ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
730103 54

GTG ...

VVL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
681440 69

CTG ...

LSL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC
939785 48

ATA ...

IIH ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
668034 114

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
671189 39

GTG ...

VKN ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Liver
632434 189

GTG ...

VDL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
964433 177

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
941590 105

ATT ...

INF ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
659248 258

CTG ...

LQT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
918297 60

ATT ...

IPR ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
640609 180

CTG ...

LTT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
673733 30

ATG ...

MLP ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC
911256 111

ATT ...

ITI ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
653961 33

TTG ...

LLL ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC, Liver
752050 141

CTG ...

LPP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF
694189 279

GTG ...

VTH ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
646033 60

TTG ...

LLF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
651166 51

ATG ...

MTS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
670318 135

TTG ...

LAR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
966040 216

ATA ...

IKV ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
38552 30

TTG ...

LKM ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
691649 108

TTG ...

LSG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
22560 93

CTG ...

LLL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
953228 45

AGG ...

RKQ ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
24260 51

CTG ...

LDR ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
933822 159

AAG ...

KET ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
715612 132

TTG ...

LFC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
895977 78

ACG ...

TAQ ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, E14
668264 165

TTG ...

LLK ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC
655120 192

CTG ...

LGP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
944911 30

AGG ...

RFS ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
669397 198

CTG ...

LTS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
677883 57

TTG ...

LKN ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC
21978 75

GTG ...

VWF ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC
548763 147

CTG ...

LLI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
946432 57

ATC ...

ISS ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
953758 57

AAG ...

KQM ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
675189 48

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
702363 63

TTG ...

LLP ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, Liver
943138 72

ATA ...

INF ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
670162 33

CTG ...

LIV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
34394 36

GTG ...

VGT ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver
702255 126

CTG ...

LPA ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
741939 198

CTG ...

LLK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
32608 33

TTG ...

LLK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
639036 63

TTG ...

LLL ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC
50365 168

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
696620 51

CTG ...

LDW ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
646883 120

GTG ...

VAG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
781748 69

TTG ...

LAK ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
929425 66

AAG ...

KPR ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
24195 33

CTG ...

LAW ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC, Brain
547359 201

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
680204 156

CTG ...

LTI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
657647 30

TTG ...

LLH ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, Liver
721738 36

GTG ...

VTD ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
934218 204

ATC ...

IYS ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
934853 87

ATT ...

IAL ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

727980 111

GTG ...

VTQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
701448 36

GTG ...

VTG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
294469 75

ATG ...

MGS ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, Liver
707332 72

ATG ...

MGL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
719870 93

GTG ...

VKL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
728989 165

GTG ...

VTG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1736143 39

ATG ...

MRT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
707760 165

CTG ...

LPD ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1218851 138

ACG ...

TGE ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
41890 57

TTG ...

LEP ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, Liver, Testis
668034 114

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
598239 123

CTG ...

LSI ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
21978 75

GTG ...

VWF ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
641125 156

GTG ...

VKL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
942533 60

AAG ...

KKP ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
702255 126

CTG ...

LPA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
698928 141

CTG ...

LHQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
694189 279

GTG ...

VTH ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
623191 96

GTG ...

VPE ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
716959 54

ATG ...

MAR ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
413963 63

ATC ...

IEV ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
674084 60

GTG ...

VGS ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
670675 33

CTG ...

LEV ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
137528 138

TTG ...

LKE ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    sORF
    Upstream
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
1719704 45

GTG ...

VTM ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
669397 198

CTG ...

LTS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
671972 33

TTG ...

LPT ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
670318 135

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
961294 117

AGG ...

RTV ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
661744 45

CTG ...

LRA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
24260 51

CTG ...

LDR ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
637319 150

CTG ...

LMS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
964566 33

ACG ...

TPP ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
731072 36

ATG ...

MLP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
34843 66

ATG ...

MSL ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, Brain,
Liver, MEF, Testis
1743813 33

TTG ...

LKE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
632434 189

GTG ...

VDL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
24195 33

CTG ...

LAW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
729376 90

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
667398 90

TTG ...

LTW ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
686485 141

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
1227701 171

CTG ...

LKT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
659248 258

CTG ...

LQT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
730103 54

GTG ...

VVL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
692496 87

CTG ...

LVR ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
675189 48

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
667406 72

TTG ...

LLK ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
666646 102

GTG ...

VTG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
645334 69

CTG ...

LKT ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
728665 81

CTG ...

LLS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

659248 258

CTG ...

LQT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
771834 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
21978 75

GTG ...

VWF ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF
686485 141

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
1616800 87

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
670318 135

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
702255 126

CTG ...

LPA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
675189 48

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
694189 279

GTG ...

VTH ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
698928 141

CTG ...

LHQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
669397 198

CTG ...

LTS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
24260 51

CTG ...

LDR ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
Liver
24195 33

CTG ...

LAW ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
Liver
730103 54

GTG ...

VVL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

646033 60

TTG ...

LLF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
668034 114

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
24195 33

CTG ...

LAW ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    sORF
    Upstream
B_cell, BMDC, R1E,
Testis
721738 36

GTG ...

VTD ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, R1E
32261 39

CTG ...

LNL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
32608 33

TTG ...

LLK ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
686485 141

GTG ...

VLL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
730103 54

GTG ...

VVL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, R1E
640609 180

CTG ...

LTT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
691649 108

TTG ...

LSG ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, R1E
653961 33

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
R1E
1292393 54

CTG ...

LTV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
R1E
651166 51

ATG ...

MTS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, R1E
670162 33

CTG ...

LIV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
24260 51

CTG ...

LDR ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    sORF
    Upstream
B_cell, BMDC, R1E,
Testis
673733 30

ATG ...

MLP ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
771834 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, R1E
596986 39

CTG ...

LST ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
R1E
668264 165

TTG ...

LLK ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain
806418 192

CTG ...

LWS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
B_cell
639036 63

TTG ...

LLL ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, R1E
669397 198

CTG ...

LTS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
657883 72

TTG ...

LKK ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, R1E
786509 51

CTG ...

LEE ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, BMDC, R1E
815302 153

CTG ...

LTV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, BMDC
807150 168

GTG ...

VVP ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
B_cell, BMDC, MEF
696620 51

CTG ...

LDW ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, R1E
38552 30

TTG ...

LKM ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, R1E, Testis
21978 75

GTG ...

VWF ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    sORF
    Upstream
B_cell, R1E, Testis
970350 180

AGG ...

RNG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
72199 90

TTG ...

LLI ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, Testis
694189 279

GTG ...

VTH ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
30825 39

GTG ...

VQA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    sORF
    Upstream
BMDC, R1E, Testis
715612 132

TTG ...

LFC ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, R1E
698928 141

CTG ...

LHQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
B_cell
50365 168

CTG ...

LSV ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
702363 63

TTG ...

LLP ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, R1E
714947 81

TTG ...

LCC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
675189 48

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
1264616 60

CTG ...

LIL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
R1E
34394 36

GTG ...

VGT ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Testis
548763 147

CTG ...

LLI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
702255 126

CTG ...

LPA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
655120 192

CTG ...

LGP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
22560 93

CTG ...

LLL ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, Testis
807247 159

CTG ...

LIL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, MEF
671189 39

GTG ...

VKN ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
21276 36

TTG ...

LPS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, R1E,
Testis
364427 69

GTG ...

VVP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, R1E
659248 258

CTG ...

LQT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
794845 36

CTG ...

LSR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, R1E
462657 93

CTG ...

LWS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
    Upstream
B_cell, R1E, Spleen_B_cell
680204 156

CTG ...

LTI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
32906 42

TTG ...

LLC ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, R1E,
Testis
677883 57

TTG ...

LKN ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, R1E
681440 69

CTG ...

LSL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
632434 189

GTG ...

VDL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
670318 135

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
692112 57

GTG ...

VCD ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
781748 69

TTG ...

LAK ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

655120 192

CTG ...

LGP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
961264 57

ATC ...

IHF ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
364427 69

GTG ...

VVP ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
966040 216

ATA ...

IKV ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
918297 60

ATT ...

IPR ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
659248 258

CTG ...

LQT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
721738 36

GTG ...

VTD ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
675189 48

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
794845 36

CTG ...

LSR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
939785 48

ATA ...

IIH ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1212391 99

CTG ...

LIL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
731828 108

GTG ...

VVP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14
1292393 54

CTG ...

LTV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1644084 132

CTG ...

LWS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
24195 33

CTG ...

LAW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
653961 33

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
696620 51

CTG ...

LDW ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
702255 126

CTG ...

LPA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
944911 30

AGG ...

RFS ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1216403 120

AGG ...

RNG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
668034 114

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
632434 189

GTG ...

VDL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
786509 51

CTG ...

LEE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
952282 117

ATC ...

IHQ ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
30825 39

GTG ...

VQA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1189394 171

ATC ...

ITA ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    sORF
    Upstream
E14
729785 141

CTG ...

LTV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
596986 39

CTG ...

LST ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
670318 135

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1264616 60

CTG ...

LIL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
943138 72

ATA ...

INF ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1295457 81

AGG ...

RNG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
771834 57

GTG ...

VEL ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
677883 57

TTG ...

LKN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
669397 198

CTG ...

LTS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1217467 93

CTG ...

LTV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
22560 93

CTG ...

LLL ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
24260 51

CTG ...

LDR ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
E14
646033 60

TTG ...

LLF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
668264 165

TTG ...

LLK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
953228 45

AGG ...

RKQ ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

670162 33

CTG ...

LIV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
50365 168

CTG ...

LSV ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
691649 108

TTG ...

LSG ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
640609 180

CTG ...

LTT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
646033 60

TTG ...

LLF ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
696620 51

CTG ...

LDW ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
32906 42

TTG ...

LLC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
715612 132

TTG ...

LFC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
30825 39

GTG ...

VQA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Liver
596986 39

CTG ...

LST ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
677883 57

TTG ...

LKN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Liver
548763 147

CTG ...

LLI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
680204 156

CTG ...

LTI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
639036 63

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
657883 72

TTG ...

LKK ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
714947 81

TTG ...

LCC ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
598240 ENSMUST00000133152 Tor1aip2-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

34843 66

ATG ...

MSL ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
3T3
294469 75

ATG ...

MGS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    sORF
3T3
41890 57

TTG ...

LEP ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
3T3, B_cell
729376 90

TTG ...

LLL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    sORF
3T3
598239 123

CTG ...

LSI ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    sORF
3T3
2989772 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

649798 147

ATG ...

MST ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

145 ORFs
8 known transcripts
295 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

771834 57

GTG...

VEL...

GTG sORF
Upstream
ncRNA
Alternative
Liver, MEF, Neutrophil,
v6-5, B_cell, BMDC,
R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
strong 5 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
596986 39

CTG...

LST...

CTG Alternative
sORF
Upstream
3T3, BMDC, R1E,
Liver, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727980 111

GTG...

VTQ...

GTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
952282 117

ATC...

IHQ...

ATC sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21276 36

TTG...

LPS...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
659248 258

CTG...

LQT...

CTG ncRNA
sORF
Alternative
Upstream
Liver, E14, 3T3,
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1693906 45

CTG...

LGV...

CTG Alternative
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
646033 60

TTG...

LLF...

TTG Alternative
Overlapping
sORF
Upstream
B_cell, Liver, 3T3,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
655120 192

CTG...

LGP...

CTG Alternative
sORF
Upstream
E14, 3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
670162 33

CTG...

LIV...

CTG Alternative
InCDS
Overlapping
sORF
Liver, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
961264 57

ATC...

IHF...

ATC Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
740638 153

CTG...

LGS...

CTG sORF
Upstream
3T3, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
3 sORFs_org_Mouse
668034 114

CTG...

LPS...

CTG Alternative
sORF
Upstream
B_cell, 3T3, MEF,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
24195 33

CTG...

LAW...

CTG sORF
Upstream
Alternative
ncRNA
B_cell, BMDC, R1E,
Testis, E14, MEF,
3T3, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
929031 36

ATG...

MET...

ATG Alternative
Downstream
sORF
BMDC, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
Johnstone2016
958194 156

CTG...

LED...

CTG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
686485 141

GTG...

VLL...

GTG Alternative
sORF
Upstream
ncRNA
3T3, BMDC, B_cell,
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
721738 36

GTG...

VTD...

GTG Alternative
sORF
Upstream
B_cell, BMDC, R1E,
E14, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
32261 39

CTG...

LNL...

CTG Alternative
InCDS
Overlapping
sORF
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
707760 165

CTG...

LPD...

CTG InCDS
Overlapping
sORF
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
364427 69

GTG...

VVP...

GTG sORF
Upstream
Alternative
E14, Brain, Liver,
MEF, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
701448 36

GTG...

VTG...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
50365 168

CTG...

LSV...

CTG Alternative
InCDS
Overlapping
sORF
Liver, R1E, Testis,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34843 66

ATG...

MSL...

ATG sORF
Alternative
Upstream
3T3, E14, Liver,
Neutrophil, NSC, R1E,
v6-5, B_cell, BMDC,
Brain, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

598240 ENSMUST00000133152 Tor1aip2-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
1695034 120

GTG...

VAA...

GTG Alternative
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
294469 75

ATG...

MGS...

ATG Alternative
sORF
Upstream
Brain, E14, Liver,
Neutrophil, NSC, R1E,
v6-5, B_cell, BMDC,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 8 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
598240 ENSMUST00000133152 Tor1aip2-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
714947 81

TTG...

LCC...

TTG Alternative
Overlapping
sORF
Upstream
3T3, B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
966040 216

ATA...

IKV...

ATA Alternative
sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
980640 36

CTG...

LLE...

CTG Alternative
InCDS
Overlapping
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
729785 141

CTG...

LTV...

CTG Alternative
Overlapping
sORF
Upstream
3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
707332 72

ATG...

MGL...

ATG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
32608 33

TTG...

LLK...

TTG Alternative
InCDS
Overlapping
sORF
R1E, Testis, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1264616 60

CTG...

LIL...

CTG Alternative
sORF
Upstream
Liver, MEF, E14,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
918297 60

ATT...

IPR...

ATT sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21978 75

GTG...

VWF...

GTG ncRNA
sORF
Alternative
Upstream
Liver, MEF, B_cell,
R1E, Testis, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
691649 108

TTG...

LSG...

TTG Alternative
InCDS
Overlapping
sORF
Liver, B_cell, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
719870 93

GTG...

VKL...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
30825 39

GTG...

VQA...

GTG sORF
Upstream
3T3, Liver, E14,
BMDC, R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
657883 72

TTG...

LKK...

TTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
R1E, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
144751 138

CTG...

LSR...

CTG Alternative
sORF
Upstream
3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
11 sORFs_org_Mouse
413963 63

ATC...

IEV...

ATC sORF
Upstream
Alternative
E14, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
730103 54

GTG...

VVL...

GTG Alternative
sORF
Upstream
ncRNA
B_cell, R1E, 3T3,
MEF, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
598239 123

CTG...

LSI...

CTG Alternative
Overlapping
sORF
Upstream
Liver, R1E, v6-5,
BMDC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
598240 ENSMUST00000133152 Tor1aip2-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
786509 51

CTG...

LEE...

CTG sORF
Upstream
Alternative
Liver, MEF, Neutrophil,
v6-5, E14, B_cell,
BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
strong 5 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
640609 180

CTG...

LTT...

CTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, Liver,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
645334 69

CTG...

LKT...

CTG InCDS
Overlapping
sORF
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
675189 48

CTG...

LPP...

CTG Alternative
sORF
Upstream
ncRNA
E14, Liver, B_cell,
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
728989 165

GTG...

VTG...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1292393 54

CTG...

LTV...

CTG Alternative
sORF
Upstream
MEF, R1E, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1736143 39

ATG...

MRT...

ATG Alternative
InCDS
Overlapping
sORF
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1680939 72

TTG...

LQT...

TTG sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
738273 162

CTG...

LTV...

CTG Alternative
Overlapping
sORF
Upstream
3T3, Liver, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
794845 36

CTG...

LSR...

CTG Alternative
sORF
Upstream
E14, Liver, MEF,
v6-5, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
653961 33

TTG...

LLL...

TTG sORF
Upstream
R1E, E14, 3T3,
BMDC, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
32906 42

TTG...

LLC...

TTG Alternative
Overlapping
sORF
Upstream
3T3, Liver, B_cell,
Brain, R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
698928 141

CTG...

LHQ...

CTG sORF
Upstream
Alternative
ncRNA
3T3, BMDC, MEF,
B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
651166 51

ATG...

MTS...

ATG Alternative
Downstream
Overlapping
sORF
B_cell, R1E, 3T3,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
692112 57

GTG...

VCD...

GTG Alternative
sORF
Upstream
3T3, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
939785 48

ATA...

IIH...

ATA Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1218851 138

ACG...

TGE...

ACG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1212391 99

CTG...

LIL...

CTG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
731828 108

GTG...

VVP...

GTG sORF
Upstream
3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
681440 69

CTG...

LSL...

CTG Alternative
Overlapping
sORF
Upstream
3T3, BMDC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
41890 57

TTG...

LEP...

TTG Alternative
sORF
Upstream
Brain, Liver, Testis,
E14, Neutrophil, NSC,
R1E, v6-5, 3T3,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
598240 ENSMUST00000133152 Tor1aip2-209 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
716959 54

ATG...

MAR...

ATG InCDS
Overlapping
sORF
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
671189 39

GTG...

VKN...

GTG Alternative
sORF
Upstream
3T3, Liver, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1644084 132

CTG...

LWS...

CTG sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
632434 189

GTG...

VDL...

GTG Alternative
sORF
Upstream
3T3, BMDC, E14,
MEF, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
964433 177

CTG...

LLP...

CTG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
696620 51

CTG...

LDW...

CTG Alternative
sORF
Upstream
Liver, E14, B_cell,
R1E, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1616800 87

ATG...

MSR...

ATG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
641125 156

GTG...

VKL...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
702255 126

CTG...

LPA...

CTG Alternative
sORF
Upstream
ncRNA
E14, MEF, Liver,
B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
24260 51

CTG...

LDR...

CTG sORF
Upstream
Alternative
ncRNA
B_cell, BMDC, R1E,
Testis, 3T3, E14,
MEF, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
944911 30

AGG...

RFS...

AGG sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
941590 105

ATT...

INF...

ATT Alternative
Downstream
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
673733 30

ATG...

MLP...

ATG Alternative
InCDS
Overlapping
sORF
R1E, 3T3, BMDC,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
649798 147

ATG...

MST...

ATG InCDS
Overlapping
sORF
3T3, E14,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
2989772 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1216403 120

AGG...

RNG...

AGG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
942533 60

AAG...

KKP...

AAG Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
715612 132

TTG...

LFC...

TTG Alternative
InCDS
Overlapping
sORF
Liver, 3T3, B_cell,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
667406 72

TTG...

LLK...

TTG InCDS
Overlapping
sORF
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
911256 111

ATT...

ITI...

ATT Alternative
Downstream
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
668264 165

TTG...

LLK...

TTG Alternative
Overlapping
sORF
Upstream
B_cell, Brain, 3T3,
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
752050 141

CTG...

LPP...

CTG sORF
Upstream
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
694189 279

GTG...

VTH...

GTG Alternative
sORF
Upstream
ncRNA
3T3, BMDC, MEF,
B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
806418 192

CTG...

LWS...

CTG sORF
Upstream
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
639036 63

TTG...

LLL...

TTG Alternative
Overlapping
sORF
Upstream
B_cell, Brain, R1E,
Liver, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
670318 135

TTG...

LAR...

TTG Alternative
sORF
Upstream
ncRNA
3T3, BMDC, Liver,
E14, MEF, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
462657 93

CTG...

LWS...

CTG Alternative
sORF
Upstream
Liver, MEF, B_cell,
R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
669397 198

CTG...

LTS...

CTG Alternative
sORF
Upstream
ncRNA
B_cell, E14, 3T3,
BMDC, MEF, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
853311 ENSMUST00000131359 Tor1aip2-208 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
1189394 171

ATC...

ITA...

ATC sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
815302 153

CTG...

LTV...

CTG sORF
Upstream
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
729376 90

TTG...

LLL...

TTG sORF
Alternative
Upstream
3T3, E14, Liver,
NSC, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

598240 ENSMUST00000133152 Tor1aip2-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
38552 30

TTG...

LKM...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, R1E,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
807150 168

GTG...

VVP...

GTG sORF
Upstream
B_cell, BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
22560 93

CTG...

LLL...

CTG Alternative
Overlapping
sORF
Upstream
BMDC, E14, B_cell,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
623191 96

GTG...

VPE...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
953228 45

AGG...

RKQ...

AGG sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
943138 72

ATA...

INF...

ATA sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970350 180

AGG...

RNG...

AGG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1295457 81

AGG...

RNG...

AGG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
733072 201

CTG...

LWS...

CTG Alternative
Overlapping
sORF
Upstream
3T3, Liver, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
72199 90

TTG...

LLI...

TTG Alternative
Overlapping
sORF
Upstream
B_cell, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
933822 159

AAG...

KET...

AAG Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
895977 78

ACG...

TAQ...

ACG sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
677883 57

TTG...

LKN...

TTG sORF
Upstream
E14, 3T3, BMDC,
Liver, B_cell, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1217467 93

CTG...

LTV...

CTG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

731829 ENSMUST00000065648 Tor1aip2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
674084 60

GTG...

VGS...

GTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
548763 147

CTG...

LLI...

CTG Alternative
InCDS
Overlapping
sORF
Liver, 3T3, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
415252 168

CTG...

LIL...

CTG Alternative
Overlapping
sORF
Upstream
3T3, C2C12, Liver,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
702363 63

TTG...

LLP...

TTG sORF
Upstream
BMDC, R1E, 3T3,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
670675 33

CTG...

LEV...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
946432 57

ATC...

ISS...

ATC Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
137528 138

TTG...

LKE...

TTG sORF
Upstream
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
9 sORFs_org_Mouse
953758 57

AAG...

KQM...

AAG Alternative
Downstream
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1719704 45

GTG...

VTM...

GTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1181662 153

AAG...

KLM...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
661744 45

CTG...

LRA...

CTG Alternative
InCDS
Overlapping
sORF
MEF, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
34394 36

GTG...

VGT...

GTG Alternative
InCDS
Overlapping
sORF
Brain, R1E, Testis,
3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
671972 33

TTG...

LPT...

TTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
692496 87

CTG...

LVR...

CTG InCDS
Overlapping
sORF
Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
734497 228

GTG...

VAA...

GTG Alternative
Overlapping
sORF
Upstream
3T3, E14, MEF,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
961294 117

AGG...

RTV...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
680204 156

CTG...

LTI...

CTG Alternative
InCDS
Overlapping
sORF
Liver, R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

847252 ENSMUST00000128941 Tor1aip2-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
697996 78

ATG...

MPR...

ATG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
741939 198

CTG...

LLK...

CTG sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
637319 150

CTG...

LMS...

CTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
807247 159

CTG...

LIL...

CTG sORF
Upstream
B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
964566 33

ACG...

TPP...

ACG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
731072 36

ATG...

MLP...

ATG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1743813 33

TTG...

LKE...

TTG sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1173587 177

GTG...

VVP...

GTG Alternative
Overlapping
sORF
Upstream
Liver, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
667398 90

TTG...

LTW...

TTG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
646883 120

GTG...

VAG...

GTG Alternative
sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
781748 69

TTG...

LAK...

TTG Alternative
Downstream
Overlapping
sORF
BMDC, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
21277 ENSMUST00000097526 Tor1aip2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
929425 66

AAG...

KPR...

AAG Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1227701 171

CTG...

LKT...

CTG sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1677716 57

CTG...

LPW...

CTG Alternative
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
547359 201

GTG...

VLL...

GTG sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
657647 30

TTG...

LLH...

TTG sORF
Upstream
3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
666646 102

GTG...

VTG...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
934218 204

ATC...

IYS...

ATC sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
728665 81

CTG...

LLS...

CTG Alternative
InCDS
Overlapping
sORF
3T3, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

34844 ENSMUST00000111757 Tor1aip2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
144752 ENSMUST00000060404 Tor1aip2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
934853 87

ATT...

IAL...

ATT Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

547360 ENSMUST00000111754 Tor1aip2-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5