Transcript 21277 | MetamORF

Transcript

ID CARD

MetamORF ID

21277

ENSMUST00000097526

Name

Tor1aip2-203

Strand

Biotype

protein_coding

Start-end positions

156040917-156053736

CDS Start-stop positions

156051878-156052273

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:240832

Aliases

1110020D10Rik,
15kDa, A130072J07, AA103493,
AW060462, AW610675, C77739,
ENSMUSG00000050565, Ifrg15, Lull1,
MGI:3582695, NCBI:240832, OFF:Tor1aip2,
Tor1aip2

Chr 1

ORFs

60 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
646033	60	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
668034	114	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
24195	33	CTG ...	LAW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, R1E, Testis
721738	36	GTG ...	VTD ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, R1E
32261	39	CTG ...	LNL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Testis
32608	33	TTG ...	LLK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Testis
686485	141	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
730103	54	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, R1E
640609	180	CTG ...	LTT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
691649	108	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
653961	33	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	R1E
1292393	54	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	R1E
651166	51	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E
670162	33	CTG ...	LIV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
24260	51	CTG ...	LDR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, R1E, Testis
673733	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
771834	57	GTG ...	VEL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, R1E
596986	39	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
668264	165	TTG ...	LLK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain
806418	192	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
639036	63	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, R1E
669397	198	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
657883	72	TTG ...	LKK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
786509	51	CTG ...	LEE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, R1E
815302	153	CTG ...	LTV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC
807150	168	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, MEF
696620	51	CTG ...	LDW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, R1E
38552	30	TTG ...	LKM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E, Testis
21978	75	GTG ...	VWF ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	B_cell, R1E, Testis
970350	180	AGG ...	RNG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
72199	90	TTG ...	LLI ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Testis
694189	279	GTG ...	VTH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
30825	39	GTG ...	VQA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, R1E, Testis
715612	132	TTG ...	LFC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
698928	141	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
50365	168	CTG ...	LSV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Testis
702363	63	TTG ...	LLP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, R1E
714947	81	TTG ...	LCC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
675189	48	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1264616	60	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	R1E
34394	36	GTG ...	VGT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
548763	147	CTG ...	LLI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
702255	126	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
655120	192	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
22560	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Testis
807247	159	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
671189	39	GTG ...	VKN ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
21276	36	TTG ...	LPS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E, Testis
364427	69	GTG ...	VVP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, R1E
659248	258	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
794845	36	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, R1E
462657	93	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, R1E, Spleen_B_cell
680204	156	CTG ...	LTI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
32906	42	TTG ...	LLC ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, R1E, Testis
677883	57	TTG ...	LKN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, R1E
681440	69	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
632434	189	GTG ...	VDL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
670318	135	TTG ...	LAR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
692112	57	GTG ...	VCD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
781748	69	TTG ...	LAK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell

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