Transcript 144752

Transcript

ID CARD

MetamORF ID

144752

ENSMUST00000060404

Name

Tor1aip2-201

Strand

Biotype

protein_coding

Start-end positions

156040890-156068861

CDS Start-stop positions

156059521-156065458

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:240832

Aliases

1110020D10Rik,
15kDa, A130072J07, AA103493,
AW060462, AW610675, C77739,
ENSMUSG00000050565, Ifrg15, Lull1,
MGI:3582695, NCBI:240832, OFF:Tor1aip2,
Tor1aip2

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
771834	57	GTG ...	VEL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, v6-5
1693906	45	CTG ...	LGV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
707760	165	CTG ...	LPD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1695034	120	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
294469	75	ATG ...	MGS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Liver, Neutrophil, NSC, R1E, v6-5
980640	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1264616	60	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF
144751	138	CTG ...	LSR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
598239	123	CTG ...	LSI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, R1E, v6-5
786509	51	CTG ...	LEE ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, v6-5
645334	69	CTG ...	LKT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1292393	54	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1680939	72	TTG ...	LQT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF
738273	162	CTG ...	LTV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, v6-5
364427	69	GTG ...	VVP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF
716959	54	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
41890	57	TTG ...	LEP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, Neutrophil, NSC, R1E, v6-5
649798	147	ATG ...	MST ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
667406	72	TTG ...	LLK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
34843	66	ATG ...	MSL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, Neutrophil, NSC, R1E, v6-5
1736143	39	ATG ...	MRT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
462657	93	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF
733072	201	CTG ...	LWS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, v6-5
794845	36	CTG ...	LSR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, MEF, v6-5
415252	168	CTG ...	LIL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, C2C12, Liver, MEF, v6-5
729376	90	TTG ...	LLL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, NSC, R1E, v6-5
1181662	153	AAG ...	KLM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
661744	45	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
692496	87	CTG ...	LVR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
734497	228	GTG ...	VAA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, R1E, v6-5
697996	78	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
670675	33	CTG ...	LEV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1173587	177	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, v6-5
1677716	57	CTG ...	LPW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
728665	81	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5

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