Transcript 34844 | MetamORF

Transcript

ID CARD

MetamORF ID

34844

ENSMUST00000111757

Name

Tor1aip2-205

Strand

Biotype

protein_coding

Start-end positions

156035403-156068861

CDS Start-stop positions

156059521-156065458

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:240832

Aliases

1110020D10Rik,
15kDa, A130072J07, AA103493,
AW060462, AW610675, C77739,
ENSMUSG00000050565, Ifrg15, Lull1,
MGI:3582695, NCBI:240832, OFF:Tor1aip2,
Tor1aip2

Chr 1

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
727980	111	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
701448	36	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
294469	75	ATG ...	MGS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Liver
707332	72	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
719870	93	GTG ...	VKL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
728989	165	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1736143	39	ATG ...	MRT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
707760	165	CTG ...	LPD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1218851	138	ACG ...	TGE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
41890	57	TTG ...	LEP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, Testis
668034	114	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
598239	123	CTG ...	LSI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
21978	75	GTG ...	VWF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
641125	156	GTG ...	VKL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
942533	60	AAG ...	KKP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
702255	126	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
698928	141	CTG ...	LHQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
694189	279	GTG ...	VTH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
623191	96	GTG ...	VPE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
716959	54	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
413963	63	ATC ...	IEV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
674084	60	GTG ...	VGS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
670675	33	CTG ...	LEV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
137528	138	TTG ...	LKE ...	Ribo-seq	TTG		9	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Liver, MEF, NSC, v6-5
1719704	45	GTG ...	VTM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
669397	198	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
671972	33	TTG ...	LPT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
670318	135	TTG ...	LAR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
961294	117	AGG ...	RTV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
661744	45	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
24260	51	CTG ...	LDR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
637319	150	CTG ...	LMS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
964566	33	ACG ...	TPP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
731072	36	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
34843	66	ATG ...	MSL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, Testis
1743813	33	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	MEF
632434	189	GTG ...	VDL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
24195	33	CTG ...	LAW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
729376	90	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
667398	90	TTG ...	LTW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
686485	141	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
1227701	171	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
659248	258	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
730103	54	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
692496	87	CTG ...	LVR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
675189	48	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
667406	72	TTG ...	LLK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
666646	102	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
645334	69	CTG ...	LKT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
728665	81	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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