Transcript 547360

Transcript

ID CARD

MetamORF ID

547360

ENSMUST00000111754

Name

Tor1aip2-204

Strand

Biotype

protein_coding

Start-end positions

156035726-156053529

CDS Start-stop positions

156051878-156052273

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:240832

Aliases

1110020D10Rik,
15kDa, A130072J07, AA103493,
AW060462, AW610675, C77739,
ENSMUSG00000050565, Ifrg15, Lull1,
MGI:3582695, NCBI:240832, OFF:Tor1aip2,
Tor1aip2

Chr 1

ORFs

74 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
596986	39	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
952282	117	ATC ...	IHQ ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
21276	36	TTG ...	LPS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
740638	153	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, E14, MEF
929031	36	ATG ...	MET ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
958194	156	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
686485	141	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
714947	81	TTG ...	LCC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
729785	141	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
961264	57	ATC ...	IHF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30825	39	GTG ...	VQA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
657883	72	TTG ...	LKK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
413963	63	ATC ...	IEV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
32906	42	TTG ...	LLC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
698928	141	CTG ...	LHQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
692112	57	GTG ...	VCD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
730103	54	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
681440	69	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC
939785	48	ATA ...	IIH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
668034	114	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
671189	39	GTG ...	VKN ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver
632434	189	GTG ...	VDL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
964433	177	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
941590	105	ATT ...	INF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
659248	258	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
918297	60	ATT ...	IPR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
640609	180	CTG ...	LTT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
673733	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
911256	111	ATT ...	ITI ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
653961	33	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Liver
752050	141	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
694189	279	GTG ...	VTH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
646033	60	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
651166	51	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
670318	135	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
966040	216	ATA ...	IKV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
38552	30	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
691649	108	TTG ...	LSG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
22560	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
953228	45	AGG ...	RKQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
24260	51	CTG ...	LDR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
933822	159	AAG ...	KET ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
715612	132	TTG ...	LFC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
895977	78	ACG ...	TAQ ...	Ribo-seq	ACG		2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
668264	165	TTG ...	LLK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC
655120	192	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
944911	30	AGG ...	RFS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
669397	198	CTG ...	LTS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
677883	57	TTG ...	LKN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
21978	75	GTG ...	VWF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
548763	147	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
946432	57	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
953758	57	AAG ...	KQM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
675189	48	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
702363	63	TTG ...	LLP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, Liver
943138	72	ATA ...	INF ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
670162	33	CTG ...	LIV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
34394	36	GTG ...	VGT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
702255	126	CTG ...	LPA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
741939	198	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
32608	33	TTG ...	LLK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
639036	63	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC
50365	168	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
696620	51	CTG ...	LDW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
646883	120	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
781748	69	TTG ...	LAK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
929425	66	AAG ...	KPR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
24195	33	CTG ...	LAW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain
547359	201	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	3T3
680204	156	CTG ...	LTI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
657647	30	TTG ...	LLH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, Liver
721738	36	GTG ...	VTD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
934218	204	ATC ...	IYS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
934853	87	ATT ...	IAL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC

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