Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:22388

Aliases

Aip1
D5Wsu185e, ENSMUSG00000005103, MGI:1337100
NCBI:22388, OFF:Wdr1, rede
Wdr1

Chromosome

5

Transcripts

160 ORFs
11 known transcripts
289 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

559286 129

CTG ...

LKD ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
R1E
517575 57

CTG ...

LKS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, Spleen_B_cell
1383064 66

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
166993 36

GTG ...

VLQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
521744 36

CTG ...

LVG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, Spleen_B_cell
167731 69

CTG ...

LAT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF, Spleen_B_cell
518201 33

GTG ...

VGT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Spleen_B_cell
1664336 66

GTG ...

VHP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, R1E
517505 45

CTG ...

LCT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Spleen_B_cell
519255 60

CTG ...

LPT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
E14, Spleen_B_cell
1777 ENSMUST00000201260 Wdr1-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

188416 87

CTG ...

LDT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
188160 147

ATG ...

MGR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
188119 87

ATG ...

MDI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
183227 78

CTG ...

LSS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
1776 183

GTG ...

VGE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil, NSC,
Skin_tumor, Testis
1019891 144

GTG ...

VDI ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
MEF, Neutrophil, NSC
2414 207

CTG ...

LSY ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC, Skin_tumor
169915 45

CTG ...

LPL ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, MEF
2412 198

TTG ...

LNV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, Skin_tumor
2429 225

GTG ...

VCI ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
2483 159

CTG ...

LGR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil, Skin_tumor
177840 54

GTG ...

VLR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, Neutrophil
190019 177

ATG ...

MST ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, Neutrophil
522731 45

CTG ...

LGS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
1018570 102

GTG ...

VVV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
1062592 72

ATG ...

MHP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
    Upstream
Neutrophil
189609 300

GTG ...

VMI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, Brain
524635 99

CTG ...

LGA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
184468 51

CTG ...

LWV ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
187955 90

ATG ...

MMD ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
523533 54

CTG ...

LCC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
184403 45

GTG ...

VRS ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
901994 138

ATA ...

IKQ ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
170191 48

ATG ...

MTP ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
902632 126

AGG ...

RPY ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
519573 33

CTG ...

LWS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
521221 57

GTG ...

VSD ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
168306 45

CTG ...

LGD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
186853 198

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
905878 147

AGG ...

RTL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
184301 60

CTG ...

LAL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
904514 63

ACG ...

TSL ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1469021 132

GTG ...

VGE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
906044 129

AAG ...

KTV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
183771 63

CTG ...

LDT ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, NSC
518871 60

CTG ...

LCC ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, NSC
174843 66

GTG ...

VMI ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, Neutrophil, NSC
520602 45

CTG ...

LLL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
Neutrophil
183711 156

CTG ...

LWS ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, E14, MEF,
Neutrophil, NSC
189986 297

ATG ...

MIT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, Brain
2464 141

TTG ...

LPG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil, Skin_tumor
574516 120

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
178485 51

TTG ...

LAL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
166999 84

TTG ...

LEL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
188426 216

GTG ...

VCD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
v6-5
519206 42

ATG ...

MAM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
178001 54

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
185440 126

ATG ...

MFW ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC
180237 63

ATG ...

MIT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF, Neutrophil,
NSC
188511 180

CTG ...

LWS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Brain, E14
167731 69

CTG ...

LAT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
190556 150

ATG ...

MFW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
189677 123

ATG ...

MVA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
903223 69

ATC ...

IKD ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
517112 51

CTG ...

LSL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Neutrophil
178455 51

CTG ...

LRS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, Neutrophil
167000 ENSMUST00000201150 Wdr1-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

184619 48

GTG ...

VPL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
183227 78

CTG ...

LSS ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain
171033 75

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
521069 45

CTG ...

LMG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
566418 30

GTG ...

VCP ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
168070 150

TTG ...

LPL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1018570 102

GTG ...

VVV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
178455 51

CTG ...

LRS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
184301 60

CTG ...

LAL ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
Brain
184468 51

CTG ...

LWV ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Spleen_B_cell
180237 63

ATG ...

MIT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
1018680 72

GTG ...

VCA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
521928 36

CTG ...

LIS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
182813 72

ATG ...

MGR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
518871 60

CTG ...

LCC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
173455 39

TTG ...

LLI ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
166999 84

TTG ...

LEL ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
Brain
168461 69

TTG ...

LST ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
1018487 30

TTG ...

LPQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
522157 42

ATG ...

MGT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
565812 42

TTG ...

LEK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
518613 63

TTG ...

LTL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
520602 45

CTG ...

LLL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
177840 54

GTG ...

VLR ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
1776 183

GTG ...

VGE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
1020030 123

GTG ...

VRF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
828607 57

CTG ...

LIG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
1019891 144

GTG ...

VDI ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
64189 30

GTG ...

VGE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
174843 66

GTG ...

VMI ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
516691 60

GTG ...

VCD ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
828608 ENSMUST00000202766 Wdr1-211 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

517319 141

ATG ...

MHR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC
522731 45

CTG ...

LGS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14
184301 60

CTG ...

LAL ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, Liver, MEF
64189 30

GTG ...

VGE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Liver
828607 57

CTG ...

LIG ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
MEF, v6-5
184403 45

GTG ...

VRS ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, Liver, MEF
183227 78

CTG ...

LSS ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, Liver, MEF
1661451 171

CTG ...

LCF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
166999 84

TTG ...

LEL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
520429 60

TTG ...

LYL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1662543 141

CTG ...

LGL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
184468 51

CTG ...

LWV ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
E14, Liver, MEF
178962 69

GTG ...

VPG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
521711 39

CTG ...

LGY ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
829917 72

CTG ...

LSC ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
v6-5
1468673 189

CTG ...

LTD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
168070 150

TTG ...

LPL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC
518613 63

TTG ...

LTL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1235608 72

AGG ...

RTQ ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1467982 135

TTG ...

LIF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, MEF
1234542 159

ATG ...

MST ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF
517112 51

CTG ...

LSL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14
1239341 141

CTG ...

LGR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF
519939 171

CTG ...

LGP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC
1467729 213

GTG ...

VTG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1382544 93

ATG ...

MCP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
166994 ENSMUST00000005234 Wdr1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

177339 39

CTG ...

LAR ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
524635 99

CTG ...

LGA ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, R1E, Spleen_B_cell,
v6-5
188664 186

TTG ...

LPQ ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, v6-5
2464 141

TTG ...

LPG ...

Ribo-seq
TTG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Spleen_B_cell, v6-5
183227 78

CTG ...

LSS ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell
559548 33

ATG ...

MTQ ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
168461 69

TTG ...

LST ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, v6-5
167904 60

TTG ...

LCA ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
518871 60

CTG ...

LCC ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Spleen_B_cell, v6-5
522731 45

CTG ...

LGS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
172877 39

CTG ...

LET ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Spleen_B_cell, v6-5
190615 51

ATG ...

MHP ...

Ribo-seq
ATG

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC
190896 117

TTG ...

LEK ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
2412 198

TTG ...

LNV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
1240976 105

AGG ...

RPM ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
184301 60

CTG ...

LAL ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell
173455 39

TTG ...

LLI ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
171177 33

ATG ...

MNT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
188416 87

CTG ...

LDT ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Spleen_B_cell, v6-5
524235 84

CTG ...

LCT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
1239341 141

CTG ...

LGR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
178455 51

CTG ...

LRS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
521744 36

CTG ...

LVG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
523849 72

GTG ...

VGT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
189986 297

ATG ...

MIT ...

Ribo-seq
ATG

9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, R1E, Spleen_B_cell,
v6-5
184619 48

GTG ...

VPL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
190167 123

GTG ...

VPL ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
v6-5
1237556 54

AGG ...

RQT ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
177064 87

ATG ...

MFF ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
188017 285

CTG ...

LRS ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5
518201 33

GTG ...

VGT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
174843 66

GTG ...

VMI ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
184403 45

GTG ...

VRS ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
Spleen_B_cell
177840 54

GTG ...

VLR ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
178001 54

CTG ...

LLA ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Spleen_B_cell, v6-5
176623 69

ATG ...

MQK ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
574516 120

GTG ...

VAS ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, R1E, v6-5
523533 54

CTG ...

LCC ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Spleen_B_cell,
v6-5
181397 57

GTG ...

VET ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
190556 150

ATG ...

MFW ...

Ribo-seq
ATG

7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, Spleen_B_cell
185440 126

ATG ...

MFW ...

Ribo-seq
ATG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF, Spleen_B_cell
167978 66

CTG ...

LIA ...

Ribo-seq
CTG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
519573 33

CTG ...

LWS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Spleen_B_cell,
v6-5
184468 51

CTG ...

LWV ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
1242615 294

ATA ...

ITV ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
517505 45

CTG ...

LCT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
524907 180

CTG ...

LWS ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, R1E, Spleen_B_cell
188426 216

GTG ...

VCD ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E
188160 147

ATG ...

MGR ...

Ribo-seq
ATG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
v6-5
189677 123

ATG ...

MVA ...

Ribo-seq
ATG

11 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
180237 63

ATG ...

MIT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Spleen_B_cell,
v6-5
187334 288

GTG ...

VLR ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, Spleen_B_cell, v6-5
1234542 159

ATG ...

MST ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
521221 57

GTG ...

VSD ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
Spleen_B_cell
522918 36

CTG ...

LWS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Spleen_B_cell
166993 36

GTG ...

VLQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
524044 48

CTG ...

LGD ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Spleen_B_cell,
v6-5
182813 72

ATG ...

MGR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell,
v6-5
565812 42

TTG ...

LEK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
524204 96

CTG ...

LKS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
189545 72

GTG ...

VTQ ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
187294 225

TTG ...

LST ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, v6-5
1236830 66

ATT ...

IQR ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
517575 57

CTG ...

LKS ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF
1661215 93

GTG ...

VCS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
906044 129

AAG ...

KTV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
516691 60

GTG ...

VCD ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
521928 36

CTG ...

LIS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
183771 63

CTG ...

LDT ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF, Spleen_B_cell,
v6-5
563780 66

ATG ...

MSL ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
R1E
190019 177

ATG ...

MST ...

Ribo-seq
ATG

13 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
R1E, Spleen_B_cell, v6-5
1234803 30

AGG ...

RPM ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
179085 78

ATG ...

MDT ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
521711 39

CTG ...

LGY ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
517112 51

CTG ...

LSL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
190009 150

ATG ...

MMG ...

Ribo-seq
ATG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
2483 159

CTG ...

LGR ...

Ribo-seq
CTG

12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
R1E, Spleen_B_cell, v6-5
180728 36

CTG ...

LEK ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF
524129 54

TTG ...

LAL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Spleen_B_cell,
v6-5
566418 30

GTG ...

VCP ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14
186853 198

ATG ...

MGT ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
v6-5
64189 30

GTG ...

VGE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
520602 45

CTG ...

LLL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
519206 42

ATG ...

MAM ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
188119 87

ATG ...

MDI ...

Ribo-seq
ATG

11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
167731 69

CTG ...

LAT ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF
184917 42

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
178485 51

TTG ...

LAL ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Spleen_B_cell, v6-5
568544 60

CTG ...

LSS ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, R1E
2429 225

GTG ...

VCI ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
523125 108

CTG ...

LAT ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Spleen_B_cell
171033 75

ATG ...

MMG ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
Spleen_B_cell, v6-5
169915 45

CTG ...

LPL ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E,
Spleen_B_cell, v6-5
518572 60

ATG ...

MMV ...

Ribo-seq
ATG

weak

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
166999 84

TTG ...

LEL ...

Ribo-seq
TTG

strong

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell
187955 90

ATG ...

MMD ...

Ribo-seq
ATG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
185864 201

CTG ...

LMG ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E, v6-5
1239740 123

AGG ...

RRC ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
2414 207

CTG ...

LSY ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
187108 57

CTG ...

LLA ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Spleen_B_cell, v6-5
168306 45

CTG ...

LGD ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Spleen_B_cell, v6-5
189609 300

GTG ...

VMI ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, v6-5
170191 48

ATG ...

MTP ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF
183711 156

CTG ...

LWS ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF, R1E,
Spleen_B_cell
1238186 39

AGG ...

RPH ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1237225 54

ATT ...

ICY ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
905596 120

ACG ...

TRS ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
523747 75

CTG ...

LVG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
63766 ENSMUST00000200909 Wdr1-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

64096 51

CTG ...

LSD ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, R1E,
Testis
519206 42

ATG ...

MAM ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Spleen_B_cell
177339 39

CTG ...

LAR ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain
519304 78

CTG ...

LAW ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, R1E,
Spleen_B_cell
176623 69

ATG ...

MQK ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E
518572 60

ATG ...

MMV ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
562915 36

ATG ...

MCV ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC
560183 36

GTG ...

VMP ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
522439 57

ATG ...

MVP ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
561197 33

ATG ...

MPA ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
1910 120

CTG ...

LAW ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E, Testis
177064 87

ATG ...

MFF ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E
180218 114

CTG ...

LFS ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain
178597 54

CTG ...

LVT ...

Ribo-seq
CTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E
517412 54

GTG ...

VPS ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
519302 30

GTG ...

VCT ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Spleen_B_cell
2118 66

GTG ...

VYV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E, Testis
564322 42

CTG ...

LCV ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
3T3
170566 129

CTG ...

LIL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
168595 96

CTG ...

LHH ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E
171177 33

ATG ...

MNT ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, R1E
179085 78

ATG ...

MDT ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E
2097 126

GTG ...

VCL ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
R1E, Testis
1467786 141

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
184917 42

ATG ...

MLT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Spleen_B_cell
167904 60

TTG ...

LCA ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, R1E
3000657 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

190019 177

ATG ...

MST ...

Predicted
ATG

1 Samandi2017
    sORF
189986 297

ATG ...

MIT ...

Predicted
ATG

1 Samandi2017
    sORF
190556 150

ATG ...

MFW ...

Predicted
ATG

1 Samandi2017
    sORF
189677 123

ATG ...

MVA ...

Predicted
ATG

1 Samandi2017
    sORF
1911 ENSMUST00000201059 Wdr1-203 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

2097 126

GTG ...

VCL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Skin_tumor
2118 66

GTG ...

VYV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Skin_tumor
168595 96

CTG ...

LHH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
64096 51

CTG ...

LSD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
177339 39

CTG ...

LAR ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
178597 54

CTG ...

LVT ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
1910 120

CTG ...

LAW ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Liver, Skin_tumor
519304 78

CTG ...

LAW ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
517113 ENSMUST00000201456 Wdr1-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

168070 150

TTG ...

LPL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell
521928 36

CTG ...

LIS ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
519939 171

CTG ...

LGP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
520602 45

CTG ...

LLL ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
64189 30

GTG ...

VGE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
522731 45

CTG ...

LGS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
517112 51

CTG ...

LSL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
181397 57

GTG ...

VET ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
517319 141

ATG ...

MHR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Spleen_B_cell
173455 39

TTG ...

LLI ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, v6-5
520429 60

TTG ...

LYL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
167905 ENSMUST00000201538 Wdr1-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

167904 60

TTG ...

LCA ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Spleen_B_cell
177064 87

ATG ...

MFF ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
176623 69

ATG ...

MQK ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
179085 78

ATG ...

MDT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
64096 51

CTG ...

LSD ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
2118 66

GTG ...

VYV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
171177 33

ATG ...

MNT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Spleen_B_cell
1910 120

CTG ...

LAW ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
180218 114

CTG ...

LFS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
2097 126

GTG ...

VCL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
178963 ENSMUST00000202199 Wdr1-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

520429 60

TTG ...

LYL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
178962 69

GTG ...

VPG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain
64190 ENSMUST00000201330 Wdr1-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

64189 30

GTG ...

VGE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Testis

ORFs

160 ORFs
11 known transcripts
289 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

559286 129

CTG...

LKD...

CTG ncRNA
sORF
3T3, E14, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
4 sORFs_org_Mouse
188416 87

CTG...

LDT...

CTG InCDS
Overlapping
sORF
E14, 3T3, B_cell,
BMDC, Brain, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
184619 48

GTG...

VPL...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
188160 147

ATG...

MGR...

ATG Alternative
sORF
Upstream
InCDS
Overlapping
BMDC, 3T3, Brain,
MEF, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
517319 141

ATG...

MHR...

ATG ncRNA
sORF
Intronic
B_cell, BMDC, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
177339 39

CTG...

LAR...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
E14, MEF, 3T3,
BMDC, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
64096 51

CTG...

LSD...

CTG Intronic
sORF
BMDC, Brain, R1E,
Testis, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
4 sORFs_org_Mouse
1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
1 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
190019 177

ATG...

MST...

ATG sORF
Alternative
Upstream
InCDS
Overlapping
BMDC, Neutrophil,
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3000657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
13 sORFs_org_Mouse
Johnstone2016
524635 99

CTG...

LGA...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF, R1E, Spleen_B_cell,
v6-5, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
2097 126

GTG...

VCL...

GTG Intronic
sORF
Liver, Skin_tumor, 3T3,
BMDC, Brain, R1E,
Testis, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
5 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
188664 186

TTG...

LPQ...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
188119 87

ATG...

MDI...

ATG Alternative
InCDS
Overlapping
sORF
Neutrophil, 3T3, B_cell,
Brain, E14, MEF,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
11 sORFs_org_Mouse
2464 141

TTG...

LPG...

TTG Alternative
InCDS
Overlapping
sORF
Upstream
3T3, B_cell, BMDC,
Brain, E14, MEF,
Spleen_B_cell, v6-5, Neutrophil,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
183227 78

CTG...

LSS...

CTG Alternative
InCDS
Overlapping
sORF
Upstream
Intronic
ncRNA
3T3, MEF, Spleen_B_cell,
Neutrophil, Brain, E14,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
559548 33

ATG...

MTQ...

ATG Alternative
InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
168461 69

TTG...

LST...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, Brain, v6-5,
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
4 sORFs_org_Mouse
167904 60

TTG...

LCA...

TTG InCDS
Overlapping
sORF
Intronic
MEF, v6-5, Brain,
Spleen_B_cell, 3T3, BMDC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
518871 60

CTG...

LCC...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
Upstream
3T3, E14, MEF,
Spleen_B_cell, v6-5, Brain,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
522731 45

CTG...

LGS...

CTG Alternative
sORF
Upstream
ncRNA
Intronic
3T3, B_cell, E14,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
519206 42

ATG...

MAM...

ATG Intronic
sORF
InCDS
Overlapping
3T3, BMDC, Spleen_B_cell,
Glioma, Liver, MEF,
MESC, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
172877 39

CTG...

LET...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
190615 51

ATG...

MHP...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
Johnstone2016
1776 183

GTG...

VGE...

GTG sORF
Upstream
Intronic
MEF, Neutrophil, NSC,
Skin_tumor, Testis, BMDC,
Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
190896 117

TTG...

LEK...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1019891 144

GTG...

VDI...

GTG sORF
Upstream
Intronic
MEF, Neutrophil, NSC,
BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
2414 207

CTG...

LSY...

CTG InCDS
Overlapping
sORF
NSC, Skin_tumor, E14,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
184301 60

CTG...

LAL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic
Upstream
E14, Liver, MEF,
3T3, Spleen_B_cell, Brain,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
2412 198

TTG...

LNV...

TTG InCDS
Overlapping
sORF
E14, MEF, Spleen_B_cell,
NSC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
1240976 105

AGG...

RPM...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
168070 150

TTG...

LPL...

TTG Intronic
sORF
ncRNA
MEF, Spleen_B_cell, Brain,
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
2 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
64189 30

GTG...

VGE...

GTG ncRNA
sORF
Intronic
Alternative
Overlapping
Upstream
B_cell, BMDC, Liver,
E14, MEF, R1E,
Spleen_B_cell, v6-5, 3T3,
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
5 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
64190 ENSMUST00000201330 Wdr1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
173455 39

TTG...

LLI...

TTG InCDS
Overlapping
sORF
Intronic
3T3, Brain, E14,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
171177 33

ATG...

MNT...

ATG InCDS
Overlapping
sORF
Intronic
MEF, v6-5, 3T3,
BMDC, R1E, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
171033 75

ATG...

MMG...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, 3T3, Brain,
MEF, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
169915 45

CTG...

LPL...

CTG Alternative
sORF
Upstream
InCDS
Overlapping
Brain, MEF, BMDC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
521928 36

CTG...

LIS...

CTG Intronic
sORF
InCDS
Overlapping
E14, MEF, R1E,
Spleen_B_cell, v6-5, Liver,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
weak 5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
521069 45

CTG...

LMG...

CTG Intronic
sORF
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
566418 30

GTG...

VCP...

GTG Intronic
sORF
InCDS
Overlapping
BMDC, 3T3, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
524235 84

CTG...

LCT...

CTG InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1239341 141

CTG...

LGR...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
828607 57

CTG...

LIG...

CTG ncRNA
sORF
Intronic
B_cell, BMDC, E14,
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
2118 66

GTG...

VYV...

GTG Intronic
sORF
Liver, Skin_tumor, 3T3,
BMDC, Brain, R1E,
Testis, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
5 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
519939 171

CTG...

LGP...

CTG Intronic
sORF
ncRNA
Spleen_B_cell, B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
2429 225

GTG...

VCI...

GTG InCDS
Overlapping
sORF
Skin_tumor, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
178455 51

CTG...

LRS...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
Upstream
3T3, Brain, E14,
MEF, v6-5, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
519304 78

CTG...

LAW...

CTG Intronic
sORF
3T3, BMDC, R1E,
Spleen_B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
517575 57

CTG...

LKS...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, MEF, Spleen_B_cell,
B_cell, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
168595 96

CTG...

LHH...

CTG Intronic
sORF
Liver, 3T3, BMDC,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
2483 159

CTG...

LGR...

CTG Alternative
sORF
Upstream
InCDS
Overlapping
Neutrophil, Skin_tumor, 3T3,
B_cell, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
12 sORFs_org_Mouse
184403 45

GTG...

VRS...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
Upstream
E14, Liver, MEF,
3T3, Brain, Spleen_B_cell,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1018570 102

GTG...

VVV...

GTG Intronic
sORF
Alternative
Upstream
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
521744 36

CTG...

LVG...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, MEF, 3T3,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
523849 72

GTG...

VGT...

GTG InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
189986 297

ATG...

MIT...

ATG sORF
Alternative
InCDS
Overlapping
Upstream
3T3, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3000657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
Johnstone2016
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
1383064 66

CTG...

LSL...

CTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
177840 54

GTG...

VLR...

GTG Alternative
sORF
Upstream
InCDS
Overlapping
Intronic
MEF, Neutrophil, 3T3,
Brain, E14, v6-5,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
520602 45

CTG...

LLL...

CTG Intronic
sORF
Upstream
InCDS
Overlapping
E14, MEF, R1E,
Spleen_B_cell, v6-5, Liver,
Neutrophil, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
190167 123

GTG...

VPL...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
176623 69

ATG...

MQK...

ATG Intronic
sORF
InCDS
Overlapping
3T3, BMDC, Brain,
R1E, MEF, v6-5,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1062592 72

ATG...

MHP...

ATG sORF
Upstream
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1237556 54

AGG...

RQT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
518572 60

ATG...

MMV...

ATG Intronic
sORF
InCDS
Overlapping
3T3, Spleen_B_cell, Glioma,
Liver, MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 Johnstone2016
1661451 171

CTG...

LCF...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
177064 87

ATG...

MFF...

ATG InCDS
Overlapping
sORF
Intronic
MEF, v6-5, Spleen_B_cell,
3T3, BMDC, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
188017 285

CTG...

LRS...

CTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
518201 33

GTG...

VGT...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
B_cell, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
189609 300

GTG...

VMI...

GTG Alternative
sORF
Upstream
InCDS
Overlapping
BMDC, Brain, 3T3,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
562915 36

ATG...

MCV...

ATG Intronic
sORF
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
174843 66

GTG...

VMI...

GTG Alternative
InCDS
Overlapping
sORF
Upstream
Intronic
3T3, E14, MEF,
v6-5, Neutrophil, NSC,
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
5 sORFs_org_Mouse
184468 51

CTG...

LWV...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
Upstream
ncRNA
Brain, Spleen_B_cell, 3T3,
MEF, Neutrophil, E14,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
178001 54

CTG...

LLA...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, Spleen_B_cell, v6-5,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
574516 120

GTG...

VAS...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
MEF, R1E, v6-5,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
180237 63

ATG...

MIT...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
Upstream
BMDC, Brain, 3T3,
E14, Spleen_B_cell, v6-5,
MEF, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
4 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
4 sORFs_org_Mouse
523533 54

CTG...

LCC...

CTG InCDS
Overlapping
sORF
Upstream
3T3, E14, Spleen_B_cell,
v6-5, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
190556 150

ATG...

MFW...

ATG sORF
InCDS
Overlapping
3T3, B_cell,
BMDC, Brain, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3000657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
Johnstone2016
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1018680 72

GTG...

VCA...

GTG Intronic
sORF
BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
560183 36

GTG...

VMP...

GTG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
166999 84

TTG...

LEL...

TTG ncRNA
sORF
Intronic
Alternative
InCDS
Overlapping
Upstream
MEF, Brain, 3T3,
Spleen_B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
strong 4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
166993 36

GTG...

VLQ...

GTG ncRNA
sORF
InCDS
Overlapping
R1E, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
181397 57

GTG...

VET...

GTG InCDS
Overlapping
sORF
Intronic
3T3, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
522439 57

ATG...

MVP...

ATG Intronic
sORF
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
185440 126

ATG...

MFW...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, MEF, Spleen_B_cell,
E14, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
6 sORFs_org_Mouse
520429 60

TTG...

LYL...

TTG Intronic
sORF
ncRNA
Brain, BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

178963 ENSMUST00000202199 Wdr1-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
167978 66

CTG...

LIA...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
182813 72

ATG...

MGR...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, 3T3, Brain,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
519573 33

CTG...

LWS...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1242615 294

ATA...

ITV...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
517505 45

CTG...

LCT...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, 3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
524907 180

CTG...

LWS...

CTG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
MEF, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
188426 216

GTG...

VCD...

GTG Alternative
InCDS
Overlapping
sORF
Upstream
3T3, BMDC, Brain,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
187955 90

ATG...

MMD...

ATG Alternative
InCDS
Overlapping
sORF
Neutrophil, 3T3, B_cell,
Brain, E14, MEF,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
189677 123

ATG...

MVA...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
11 sORFs_org_Mouse
Johnstone2016
3000657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
167731 69

CTG...

LAT...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, MEF, Spleen_B_cell,
B_cell, BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
3 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
187334 288

GTG...

VLR...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
1234542 159

ATG...

MST...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
178597 54

CTG...

LVT...

CTG Intronic
sORF
Liver, 3T3, BMDC,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
521221 57

GTG...

VSD...

GTG Alternative
InCDS
Overlapping
sORF
3T3, E14, R1E,
Spleen_B_cell, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
522918 36

CTG...

LWS...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
901994 138

ATA...

IKQ...

ATA sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
170191 48

ATG...

MTP...

ATG Alternative
InCDS
Overlapping
sORF
Neutrophil, 3T3, B_cell,
Brain, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
561197 33

ATG...

MPA...

ATG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
524044 48

CTG...

LGD...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
1910 120

CTG...

LAW...

CTG Intronic
sORF
3T3, BMDC, Brain,
R1E, Testis, Liver,
Skin_tumor, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
5 sORFs_org_Mouse
1911 ENSMUST00000201059 Wdr1-203 retained_intron Ribo-seq
2 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
179085 78

ATG...

MDT...

ATG Intronic
sORF
InCDS
Overlapping
Spleen_B_cell, MEF, v6-5,
3T3, BMDC, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
180218 114

CTG...

LFS...

CTG Intronic
sORF
3T3, BMDC, Brain,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
3 sORFs_org_Mouse
167905 ENSMUST00000201538 Wdr1-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
902632 126

AGG...

RPY...

AGG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1662543 141

CTG...

LGL...

CTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
565812 42

TTG...

LEK...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
1018487 30

TTG...

LPQ...

TTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
522157 42

ATG...

MGT...

ATG Intronic
sORF
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
517412 54

GTG...

VPS...

GTG Intronic
sORF
3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
519302 30

GTG...

VCT...

GTG Intronic
sORF
3T3, BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
524204 96

CTG...

LKS...

CTG InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
189545 72

GTG...

VTQ...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
187294 225

TTG...

LST...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
178962 69

GTG...

VPG...

GTG ncRNA
sORF
Intronic
BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
178963 ENSMUST00000202199 Wdr1-209 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
1236830 66

ATT...

IQR...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
521711 39

CTG...

LGY...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
E14, 3T3, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
168306 45

CTG...

LGD...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, MEF,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
829917 72

CTG...

LSC...

CTG ncRNA
sORF
B_cell, BMDC, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1661215 93

GTG...

VCS...

GTG InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
906044 129

AAG...

KTV...

AAG Alternative
InCDS
Overlapping
sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1468673 189

CTG...

LTD...

CTG ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
186853 198

ATG...

MGT...

ATG Alternative
sORF
Upstream
InCDS
Overlapping
BMDC, 3T3, Brain,
E14, MEF, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
517112 51

CTG...

LSL...

CTG Intronic
sORF
Alternative
Upstream
ncRNA
Spleen_B_cell, 3T3, B_cell,
BMDC, E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517113 ENSMUST00000201456 Wdr1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
516691 60

GTG...

VCD...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, B_cell, BMDC,
Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
905878 147

AGG...

RTL...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
183771 63

CTG...

LDT...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, MEF, Spleen_B_cell,
v6-5, E14, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
5 sORFs_org_Mouse
563780 66

ATG...

MSL...

ATG Alternative
InCDS
Overlapping
sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
Johnstone2016
518613 63

TTG...

LTL...

TTG Intronic
sORF
ncRNA
Spleen_B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1234803 30

AGG...

RPM...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
904514 63

ACG...

TSL...

ACG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1469021 132

GTG...

VGE...

GTG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
564322 42

CTG...

LCV...

CTG Intronic
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1664336 66

GTG...

VHP...

GTG ncRNA
sORF
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
190009 150

ATG...

MMG...

ATG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
1020030 123

GTG...

VRF...

GTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

167000 ENSMUST00000201150 Wdr1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
183711 156

CTG...

LWS...

CTG Alternative
Overlapping
sORF
Upstream
InCDS
Brain, E14, MEF,
Neutrophil, NSC, 3T3,
B_cell, BMDC, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
6 sORFs_org_Mouse
166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
170566 129

CTG...

LIL...

CTG Intronic
sORF
BMDC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
2 sORFs_org_Mouse
180728 36

CTG...

LEK...

CTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Brain,
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
524129 54

TTG...

LAL...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
184917 42

ATG...

MLT...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
178485 51

TTG...

LAL...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, MEF,
Spleen_B_cell, v6-5, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1235608 72

AGG...

RTQ...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
568544 60

CTG...

LSS...

CTG Alternative
InCDS
Overlapping
sORF
3T3, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
523125 108

CTG...

LAT...

CTG InCDS
Overlapping
sORF
BMDC, E14, MEF,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1467982 135

TTG...

LIF...

TTG ncRNA
sORF
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
185864 201

CTG...

LMG...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
188511 180

CTG...

LWS...

CTG Overlapping
sORF
Upstream
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
2 sORFs_org_Mouse
1239740 123

AGG...

RRC...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
187108 57

CTG...

LLA...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
519255 60

CTG...

LPT...

CTG ncRNA
sORF
E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

517506 ENSMUST00000202496 Wdr1-210 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1467786 141

CTG...

LAL...

CTG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63766 ENSMUST00000200909 Wdr1-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
1467729 213

GTG...

VTG...

GTG ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
903223 69

ATC...

IKD...

ATC sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1777 ENSMUST00000201260 Wdr1-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
1382544 93

ATG...

MCP...

ATG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

828608 ENSMUST00000202766 Wdr1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1238186 39

AGG...

RPH...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1237225 54

ATT...

ICY...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
905596 120

ACG...

TRS...

ACG InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
523747 75

CTG...

LVG...

CTG InCDS
Overlapping
sORF
BMDC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

166994 ENSMUST00000005234 Wdr1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5