Transcript 828608

Transcript

ID CARD

MetamORF ID

828608

ENSMUST00000202766

Name

Wdr1-211

Strand

Biotype

processed_transcript

Start-end positions

38545675-38563221

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:22388

Aliases

Aip1,
D5Wsu185e, ENSMUSG00000005103, MGI:1337100,
NCBI:22388, OFF:Wdr1, rede,
Wdr1

Chr 5

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
517319	141	ATG ...	MHR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
522731	45	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
184301	60	CTG ...	LAL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
64189	30	GTG ...	VGE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Liver
828607	57	CTG ...	LIG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, v6-5
184403	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
183227	78	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
1661451	171	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
166999	84	TTG ...	LEL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
520429	60	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1662543	141	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
184468	51	CTG ...	LWV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
178962	69	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
521711	39	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
829917	72	CTG ...	LSC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, v6-5
1468673	189	CTG ...	LTD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
168070	150	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
518613	63	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1235608	72	AGG ...	RTQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1467982	135	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
1234542	159	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
517112	51	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14
1239341	141	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
519939	171	CTG ...	LGP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
1467729	213	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1382544	93	ATG ...	MCP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14

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