Transcript 166994

Transcript

ID CARD

MetamORF ID

166994

ENSMUST00000005234

Name

Wdr1-201

Strand

Biotype

protein_coding

Start-end positions

38526813-38561806

CDS Start-stop positions

38527806-38561531

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:22388

Aliases

Aip1,
D5Wsu185e, ENSMUSG00000005103, MGI:1337100,
NCBI:22388, OFF:Wdr1, rede,
Wdr1

Chr 5

ORFs

108 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
177339	39	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
524635	99	CTG ...	LGA ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
188664	186	TTG ...	LPQ ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, v6-5
2464	141	TTG ...	LPG ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
183227	78	CTG ...	LSS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
559548	33	ATG ...	MTQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
168461	69	TTG ...	LST ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, v6-5
167904	60	TTG ...	LCA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
518871	60	CTG ...	LCC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
522731	45	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
172877	39	CTG ...	LET ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, v6-5
190615	51	ATG ...	MHP ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC
190896	117	TTG ...	LEK ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
2412	198	TTG ...	LNV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
1240976	105	AGG ...	RPM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
184301	60	CTG ...	LAL ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
173455	39	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
171177	33	ATG ...	MNT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
188416	87	CTG ...	LDT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell, v6-5
524235	84	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
1239341	141	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
178455	51	CTG ...	LRS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
521744	36	CTG ...	LVG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
523849	72	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
189986	297	ATG ...	MIT ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
184619	48	GTG ...	VPL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
190167	123	GTG ...	VPL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, Spleen_B_cell, v6-5
1237556	54	AGG ...	RQT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
177064	87	ATG ...	MFF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
188017	285	CTG ...	LRS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
518201	33	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
174843	66	GTG ...	VMI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
184403	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
177840	54	GTG ...	VLR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
178001	54	CTG ...	LLA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
176623	69	ATG ...	MQK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
574516	120	GTG ...	VAS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
523533	54	CTG ...	LCC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Spleen_B_cell, v6-5
181397	57	GTG ...	VET ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
190556	150	ATG ...	MFW ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
185440	126	ATG ...	MFW ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell
167978	66	CTG ...	LIA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
519573	33	CTG ...	LWS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
184468	51	CTG ...	LWV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
1242615	294	ATA ...	ITV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
517505	45	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
524907	180	CTG ...	LWS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, R1E, Spleen_B_cell
188426	216	GTG ...	VCD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E
188160	147	ATG ...	MGR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, Spleen_B_cell, v6-5
189677	123	ATG ...	MVA ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
180237	63	ATG ...	MIT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell, v6-5
187334	288	GTG ...	VLR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
1234542	159	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
521221	57	GTG ...	VSD ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, Spleen_B_cell
522918	36	CTG ...	LWS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
166993	36	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
524044	48	CTG ...	LGD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
182813	72	ATG ...	MGR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell, v6-5
565812	42	TTG ...	LEK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
524204	96	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
189545	72	GTG ...	VTQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
187294	225	TTG ...	LST ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, v6-5
1236830	66	ATT ...	IQR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
517575	57	CTG ...	LKS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
1661215	93	GTG ...	VCS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
906044	129	AAG ...	KTV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
516691	60	GTG ...	VCD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
521928	36	CTG ...	LIS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
183771	63	CTG ...	LDT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
563780	66	ATG ...	MSL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, R1E
190019	177	ATG ...	MST ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1234803	30	AGG ...	RPM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
179085	78	ATG ...	MDT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
521711	39	CTG ...	LGY ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
517112	51	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
190009	150	ATG ...	MMG ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
2483	159	CTG ...	LGR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
180728	36	CTG ...	LEK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF
524129	54	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
566418	30	GTG ...	VCP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
186853	198	ATG ...	MGT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, v6-5
64189	30	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
520602	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
519206	42	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
188119	87	ATG ...	MDI ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
167731	69	CTG ...	LAT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
184917	42	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
178485	51	TTG ...	LAL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell, v6-5
568544	60	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
2429	225	GTG ...	VCI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
523125	108	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Spleen_B_cell
171033	75	ATG ...	MMG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell, v6-5
169915	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell, v6-5
518572	60	ATG ...	MMV ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
166999	84	TTG ...	LEL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
187955	90	ATG ...	MMD ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
185864	201	CTG ...	LMG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, R1E, v6-5
1239740	123	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
2414	207	CTG ...	LSY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
187108	57	CTG ...	LLA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
168306	45	CTG ...	LGD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell, v6-5
189609	300	GTG ...	VMI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
170191	48	ATG ...	MTP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF
183711	156	CTG ...	LWS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell
1238186	39	AGG ...	RPH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1237225	54	ATT ...	ICY ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
905596	120	ACG ...	TRS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
523747	75	CTG ...	LVG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell

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