Transcript 63766 | MetamORF

Transcript

ID CARD

MetamORF ID

63766

ENSMUST00000200909

Name

Wdr1-202

Strand

Biotype

retained_intron

Start-end positions

38527580-38530126

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:22388

Aliases

Aip1,
D5Wsu185e, ENSMUSG00000005103, MGI:1337100,
NCBI:22388, OFF:Wdr1, rede,
Wdr1

Chr 5

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
64096	51	CTG ...	LSD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E, Testis
519206	42	ATG ...	MAM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
177339	39	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
519304	78	CTG ...	LAW ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, R1E, Spleen_B_cell
176623	69	ATG ...	MQK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
518572	60	ATG ...	MMV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
562915	36	ATG ...	MCV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
560183	36	GTG ...	VMP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
522439	57	ATG ...	MVP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
561197	33	ATG ...	MPA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1910	120	CTG ...	LAW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Testis
177064	87	ATG ...	MFF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
180218	114	CTG ...	LFS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
178597	54	CTG ...	LVT ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
517412	54	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
519302	30	GTG ...	VCT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
2118	66	GTG ...	VYV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Testis
564322	42	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
170566	129	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
168595	96	CTG ...	LHH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
171177	33	ATG ...	MNT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, R1E
179085	78	ATG ...	MDT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E
2097	126	GTG ...	VCL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Testis
1467786	141	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
184917	42	ATG ...	MLT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
167904	60	TTG ...	LCA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, R1E

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