Transcript 1777 | MetamORF

Transcript

ID CARD

MetamORF ID

1777

ENSMUST00000201260

Name

Wdr1-205

Strand

Biotype

protein_coding

Start-end positions

38527587-38561635

CDS Start-stop positions

38527806-38540144

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:22388

Aliases

Aip1,
D5Wsu185e, ENSMUSG00000005103, MGI:1337100,
NCBI:22388, OFF:Wdr1, rede,
Wdr1

Chr 5

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
188416	87	CTG ...	LDT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
188160	147	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
188119	87	ATG ...	MDI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
183227	78	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
1776	183	GTG ...	VGE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, NSC, Skin_tumor, Testis
1019891	144	GTG ...	VDI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, NSC
2414	207	CTG ...	LSY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, Skin_tumor
169915	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
2412	198	TTG ...	LNV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Skin_tumor
2429	225	GTG ...	VCI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
2483	159	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, Skin_tumor
177840	54	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
190019	177	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Neutrophil
522731	45	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
1018570	102	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
1062592	72	ATG ...	MHP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	Neutrophil
189609	300	GTG ...	VMI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
524635	99	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
184468	51	CTG ...	LWV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
187955	90	ATG ...	MMD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
523533	54	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
184403	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
901994	138	ATA ...	IKQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	BMDC
170191	48	ATG ...	MTP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
902632	126	AGG ...	RPY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
519573	33	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
521221	57	GTG ...	VSD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
168306	45	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
186853	198	ATG ...	MGT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
905878	147	AGG ...	RTL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
184301	60	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
904514	63	ACG ...	TSL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1469021	132	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
906044	129	AAG ...	KTV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
183771	63	CTG ...	LDT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC
518871	60	CTG ...	LCC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, NSC
174843	66	GTG ...	VMI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, NSC
520602	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
183711	156	CTG ...	LWS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, MEF, Neutrophil, NSC
189986	297	ATG ...	MIT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
2464	141	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, Skin_tumor
574516	120	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
178485	51	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
166999	84	TTG ...	LEL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
188426	216	GTG ...	VCD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
519206	42	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
178001	54	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
185440	126	ATG ...	MFW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC
180237	63	ATG ...	MIT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil, NSC
188511	180	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, E14
167731	69	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
190556	150	ATG ...	MFW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
189677	123	ATG ...	MVA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
903223	69	ATC ...	IKD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	BMDC
517112	51	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
178455	51	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil

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