Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:17975

Aliases

B530004O11Rik
C23, D0Nds28, D1Nds28
ENSMUSG00000026234, MGI:97286, NCBI:17975
Ncl, Nucl, OFF:Ncl

Chromosome

1

Transcripts

282 ORFs
6 known transcripts
382 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

449600 ENSMUST00000188682 Ncl-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

955190 63

AGG ...

RWR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
30697 228

ATG ...

MPK ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
31613 93

GTG ...

VEA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Spleen_B_cell
40534 135

TTG ...

LVV ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
26399 123

GTG ...

VEA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
1299102 30

AGG ...

RKR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
26826 141

GTG ...

VAL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
79696 219

CTG ...

LPR ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
30323 147

GTG ...

VKV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
1188597 177

AAG ...

KLP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
84438 198

ATG ...

MEK ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
1289358 33

AAG ...

KPQ ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1302905 42

AGG ...

RWI ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
20290 237

GTG ...

VRK ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
29502 189

TTG ...

LTE ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
87324 132

GTG ...

VVE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil, Spleen_B_cell
1290600 216

ATT ...

IDG ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
34881 195

TTG ...

LDW ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, E14, MEF,
Neutrophil
1195171 57

AGG ...

RQR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1260754 42

AGG ...

RGR ...

Ribo-seq
AGG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1292084 69

AGG ...

RQR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
949811 51

AGG ...

RWK ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1188657 87

AGG ...

RQR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1225399 210

AGG ...

RPW ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1292356 186

ACG ...

TET ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1182831 36

ATT ...

IWR ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1293987 69

AGG ...

RRL ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
42 ENSMUST00000027438 Ncl-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

269 72

CTG ...

LLW ...

Ribo-seq
CTG

17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
1221846 69

AGG ...

RQR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
46778 168

GTG ...

VKM ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
C2C12, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
321784 141

CTG ...

LPL ...

Ribo-seq
CTG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, R1E,
v6-5
373240 60

TTG ...

LLK ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
1604182 57

ATG ...

MMM ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
809753 216

TTG ...

LEE ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, MEF, R1E,
v6-5
9440 45

TTG ...

LLL ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
975973 138

AGG ...

RKY ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1210556 30

AGG ...

RKR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
411368 30

CTG ...

LQS ...

Ribo-seq
CTG

weak

10 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, E14, MEF,
Neutrophil, NSC, R1E,
v6-5
967385 63

AGG ...

RWR ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1222116 57

AGG ...

RQR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
818482 222

GTG ...

VDL ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, MEF, R1E,
v6-5
327683 186

CTG ...

LHK ...

Ribo-seq
CTG

moderate

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
810603 231

GTG ...

VEE ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, MEF, R1E,
v6-5
1210253 48

AGG ...

RKN ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
15603 123

ATG ...

MMR ...

Ribo-seq
ATG

11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, Skin_tumor,
Testis
55012 69

TTG ...

LRK ...

Ribo-seq
TTG

13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
888430 162

TTG ...

LLI ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
14619 117

ATG ...

MMR ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5
415800 93

ATG ...

MMK ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, C2C12, NSC
15835 63

ATG ...

MRK ...

Ribo-seq
ATG

14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
46702 30

CTG ...

LVL ...

Ribo-seq
CTG

18 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
852393 141

CTG ...

LKL ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
16160 111

TTG ...

LRA ...

Ribo-seq
TTG

18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
1042939 69

CTG ...

LRK ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC
2021 126

ATG ...

MRK ...

Ribo-seq
ATG

14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5
456429 120

CTG ...

LAK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
9148 81

ATG ...

MMR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, Skin_tumor
33786 63

CTG ...

LSS ...

Ribo-seq
CTG

weak

8 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
14052 60

ATG ...

MMR ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, Skin_tumor
15798 141

CTG ...

LRR ...

Ribo-seq
CTG

16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis, v6-5
975918 42

AAG ...

KNT ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15723 78

ATG ...

MTK ...

Ribo-seq
ATG

18 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
1224383 138

AGG ...

RRR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1063807 33

ATG ...

MSE ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
490520 282

GTG ...

VVE ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell, v6-5
47542 114

CTG ...

LGR ...

Ribo-seq
CTG

moderate

12 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
844110 105

GTG ...

VRP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1038157 159

GTG ...

VQQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
17013 108

TTG ...

LPS ...

Ribo-seq
TTG

17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
16799 105

ATG ...

MDD ...

Ribo-seq
ATG

15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
46267 168

TTG ...

LNL ...

Ribo-seq
TTG

15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
895808 153

AAG ...

KLM ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
419564 57

GTG ...

VAS ...

Ribo-seq
GTG

moderate

9 sORFs_org_Mouse
    sORF
    Upstream
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
8645 69

ATG ...

MRK ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, Skin_tumor, v6-5
966846 75

AAG ...

KYL ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
812990 114

ATG ...

MKM ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
NSC
15331 87

ATG ...

MRM ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, Skin_tumor,
v6-5
1402 69

ATG ...

MMM ...

Ribo-seq
ATG

18 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
971543 111

AAG ...

KMM ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
491668 285

TTG ...

LVV ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, BMDC, MEF,
R1E, Spleen_B_cell, v6-5
15738 108

ATG ...

MTR ...

Ribo-seq
ATG

17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis, v6-5
968556 51

AGG ...

RWK ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
462307 117

CTG ...

LAG ...

Ribo-seq
CTG

moderate

9 sORFs_org_Mouse
    sORF
    Upstream
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
10733 87

CTG ...

LLL ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5
50911 147

ATG ...

MQR ...

Ribo-seq
ATG

15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
10687 42

TTG ...

LSK ...

Ribo-seq
TTG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, Skin_tumor, v6-5
534980 39

TTG ...

LET ...

Ribo-seq
TTG

moderate

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
Neutrophil, NSC, R1E,
v6-5
7932 42

CTG ...

LLW ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
52736 246

GTG ...

VCV ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
51292 261

ATG ...

MRA ...

Ribo-seq
ATG

13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
16922 69

TTG ...

LWM ...

Ribo-seq
TTG

18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
9189 72

ATG ...

MKR ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
1871 93

ATG ...

MMR ...

Ribo-seq
ATG

16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
968410 192

TTG ...

LEV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, v6-5
12753 135

GTG ...

VWL ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
15813 150

CTG ...

LMQ ...

Ribo-seq
CTG

14 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
739346 30

ATG ...

MAN ...

Ribo-seq
ATG

9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
v6-5
84438 198

ATG ...

MEK ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
813256 243

GTG ...

VEA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, MEF, R1E,
v6-5
1567 63

ATG ...

MSE ...

Ribo-seq
ATG

20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
C2C12, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
90377 75

GTG ...

VWL ...

Ribo-seq
GTG

weak

8 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
46414 231

CTG ...

LAK ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
975776 81

AGG ...

RQK ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
976097 72

ATT ...

IRE ...

Ribo-seq
ATT

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
975462 216

AAG ...

KSF ...

Ribo-seq
AAG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1222731 129

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
45256 81

TTG ...

LRK ...

Ribo-seq
TTG

14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
1208187 162

AAG ...

KQL ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
14170 63

CTG ...

LER ...

Ribo-seq
CTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
413330 63

TTG ...

LYV ...

Ribo-seq
TTG

weak

8 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, MEF, Neutrophil,
NSC, R1E, v6-5
1049184 39

TTG ...

LWM ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS