MetamORF
ORF ID
The MetamORF ID of the ORF. This is an unique ID referring to the ORF.
|
ORF
length
The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.
|
Nucleic
sequence
The nucleic sequence of the ORF.
|
Amino acid
sequence
The amino acid sequence of the ORF.
|
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.
|
Start codon
The start codon sequence of the ORF.
|
Kozak context
|
Exp. count
The number of original datasets that identifed the ORF on the transcript.
|
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
|
ORF annotations
|
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
|
269
|
72
|
CTG ...
|
LLW ...
|
Ribo-seq
|
CTG
|
|
17
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
1221846
|
69
|
AGG ...
|
RQR ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
46778
|
168
|
GTG ...
|
VKM ...
|
Ribo-seq
|
GTG
|
|
13
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
C2C12,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
321784
|
141
|
CTG ...
|
LPL ...
|
Ribo-seq
|
CTG
|
moderate
|
9
|
sORFs_org_Mouse
|
|
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
373240
|
60
|
TTG ...
|
LLK ...
|
Ribo-seq
|
TTG
|
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
1604182
|
57
|
ATG ...
|
MMM ...
|
Ribo-seq
|
ATG
|
|
2
|
sORFs_org_Mouse
|
|
MEF
|
809753
|
216
|
TTG ...
|
LEE ...
|
Ribo-seq
|
TTG
|
|
4
|
sORFs_org_Mouse
|
|
B_cell,
MEF,
R1E,
v6-5
|
9440
|
45
|
TTG ...
|
LLL ...
|
Ribo-seq
|
TTG
|
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
975973
|
138
|
AGG ...
|
RKY ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
MEF
|
1210556
|
30
|
AGG ...
|
RKR ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
411368
|
30
|
CTG ...
|
LQS ...
|
Ribo-seq
|
CTG
|
weak
|
10
|
sORFs_org_Mouse
|
|
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
967385
|
63
|
AGG ...
|
RWR ...
|
Ribo-seq
|
AGG
|
|
2
|
sORFs_org_Mouse
|
|
BMDC,
E14
|
1222116
|
57
|
AGG ...
|
RQR ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
818482
|
222
|
GTG ...
|
VDL ...
|
Ribo-seq
|
GTG
|
|
4
|
sORFs_org_Mouse
|
|
B_cell,
MEF,
R1E,
v6-5
|
327683
|
186
|
CTG ...
|
LHK ...
|
Ribo-seq
|
CTG
|
moderate
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
810603
|
231
|
GTG ...
|
VEE ...
|
Ribo-seq
|
GTG
|
|
4
|
sORFs_org_Mouse
|
|
B_cell,
MEF,
R1E,
v6-5
|
1210253
|
48
|
AGG ...
|
RKN ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
15603
|
123
|
ATG ...
|
MMR ...
|
Ribo-seq
|
ATG
|
|
11
|
sORFs_org_Mouse
|
|
B_cell,
E14,
MEF,
Neutrophil,
NSC,
Skin_tumor,
Testis
|
55012
|
69
|
TTG ...
|
LRK ...
|
Ribo-seq
|
TTG
|
|
13
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
888430
|
162
|
TTG ...
|
LLI ...
|
Ribo-seq
|
TTG
|
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
14619
|
117
|
ATG ...
|
MMR ...
|
Ribo-seq
|
ATG
|
|
8
|
sORFs_org_Mouse
|
|
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
415800
|
93
|
ATG ...
|
MMK ...
|
Ribo-seq
|
ATG
|
|
3
|
sORFs_org_Mouse
|
|
BMDC,
C2C12,
NSC
|
15835
|
63
|
ATG ...
|
MRK ...
|
Ribo-seq
|
ATG
|
|
14
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
46702
|
30
|
CTG ...
|
LVL ...
|
Ribo-seq
|
CTG
|
|
18
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
852393
|
141
|
CTG ...
|
LKL ...
|
Ribo-seq
|
CTG
|
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
16160
|
111
|
TTG ...
|
LRA ...
|
Ribo-seq
|
TTG
|
|
18
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
1042939
|
69
|
CTG ...
|
LRK ...
|
Ribo-seq
|
CTG
|
moderate
|
4
|
sORFs_org_Mouse
|
|
E14,
MEF,
Neutrophil,
NSC
|
2021
|
126
|
ATG ...
|
MRK ...
|
Ribo-seq
|
ATG
|
|
14
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
v6-5
|
456429
|
120
|
CTG ...
|
LAK ...
|
Ribo-seq
|
CTG
|
|
2
|
sORFs_org_Mouse
|
|
Brain,
MEF
|
9148
|
81
|
ATG ...
|
MMR ...
|
Ribo-seq
|
ATG
|
|
4
|
sORFs_org_Mouse
|
|
MEF,
Neutrophil,
Skin_tumor
|
33786
|
63
|
CTG ...
|
LSS ...
|
Ribo-seq
|
CTG
|
weak
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
14052
|
60
|
ATG ...
|
MMR ...
|
Ribo-seq
|
ATG
|
|
4
|
sORFs_org_Mouse
|
|
MEF,
Neutrophil,
Skin_tumor
|
15798
|
141
|
CTG ...
|
LRR ...
|
Ribo-seq
|
CTG
|
|
16
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
975918
|
42
|
AAG ...
|
KNT ...
|
Ribo-seq
|
AAG
|
weak
|
1
|
sORFs_org_Mouse
|
|
MEF
|
15723
|
78
|
ATG ...
|
MTK ...
|
Ribo-seq
|
ATG
|
|
18
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
1224383
|
138
|
AGG ...
|
RRR ...
|
Ribo-seq
|
AGG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
1063807
|
33
|
ATG ...
|
MSE ...
|
Ribo-seq
|
ATG
|
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
490520
|
282
|
GTG ...
|
VVE ...
|
Ribo-seq
|
GTG
|
|
7
|
sORFs_org_Mouse
|
|
B_cell,
E14,
MEF,
R1E,
Spleen_B_cell,
v6-5
|
47542
|
114
|
CTG ...
|
LGR ...
|
Ribo-seq
|
CTG
|
moderate
|
12
|
sORFs_org_Mouse
|
|
B_cell,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
844110
|
105
|
GTG ...
|
VRP ...
|
Ribo-seq
|
GTG
|
|
2
|
sORFs_org_Mouse
|
|
Brain,
MEF
|
1038157
|
159
|
GTG ...
|
VQQ ...
|
Ribo-seq
|
GTG
|
|
1
|
sORFs_org_Mouse
|
|
Neutrophil
|
17013
|
108
|
TTG ...
|
LPS ...
|
Ribo-seq
|
TTG
|
|
17
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
16799
|
105
|
ATG ...
|
MDD ...
|
Ribo-seq
|
ATG
|
|
15
|
sORFs_org_Mouse
|
|
B_cell,
BMDC,
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
46267
|
168
|
TTG ...
|
LNL ...
|
Ribo-seq
|
TTG
|
|
15
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
895808
|
153
|
AAG ...
|
KLM ...
|
Ribo-seq
|
AAG
|
|
1
|
sORFs_org_Mouse
|
|
BMDC
|
419564
|
57
|
GTG ...
|
VAS ...
|
Ribo-seq
|
GTG
|
moderate
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
8645
|
69
|
ATG ...
|
MRK ...
|
Ribo-seq
|
ATG
|
|
8
|
sORFs_org_Mouse
|
|
E14,
MEF,
Neutrophil,
NSC,
Skin_tumor,
v6-5
|
966846
|
75
|
AAG ...
|
KYL ...
|
Ribo-seq
|
AAG
|
|
2
|
sORFs_org_Mouse
|
|
BMDC,
E14
|
812990
|
114
|
ATG ...
|
MKM ...
|
Ribo-seq
|
ATG
|
|
6
|
sORFs_org_Mouse
|
|
B_cell,
MEF,
Neutrophil,
NSC
|
15331
|
87
|
ATG ...
|
MRM ...
|
Ribo-seq
|
ATG
|
|
6
|
sORFs_org_Mouse
|
|
MEF,
Neutrophil,
Skin_tumor,
v6-5
|
1402
|
69
|
ATG ...
|
MMM ...
|
Ribo-seq
|
ATG
|
|
18
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
971543
|
111
|
AAG ...
|
KMM ...
|
Ribo-seq
|
AAG
|
|
1
|
sORFs_org_Mouse
|
|
BMDC
|
491668
|
285
|
TTG ...
|
LVV ...
|
Ribo-seq
|
TTG
|
|
7
|
sORFs_org_Mouse
|
|
B_cell,
BMDC,
MEF,
R1E,
Spleen_B_cell,
v6-5
|
15738
|
108
|
ATG ...
|
MTR ...
|
Ribo-seq
|
ATG
|
|
17
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
968556
|
51
|
AGG ...
|
RWK ...
|
Ribo-seq
|
AGG
|
|
2
|
sORFs_org_Mouse
|
|
BMDC,
E14
|
462307
|
117
|
CTG ...
|
LAG ...
|
Ribo-seq
|
CTG
|
moderate
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
10733
|
87
|
CTG ...
|
LLL ...
|
Ribo-seq
|
CTG
|
|
8
|
sORFs_org_Mouse
|
|
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
50911
|
147
|
ATG ...
|
MQR ...
|
Ribo-seq
|
ATG
|
|
15
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
10687
|
42
|
TTG ...
|
LSK ...
|
Ribo-seq
|
TTG
|
weak
|
6
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
Skin_tumor,
v6-5
|
534980
|
39
|
TTG ...
|
LET ...
|
Ribo-seq
|
TTG
|
moderate
|
9
|
sORFs_org_Mouse
|
|
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
7932
|
42
|
CTG ...
|
LLW ...
|
Ribo-seq
|
CTG
|
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
52736
|
246
|
GTG ...
|
VCV ...
|
Ribo-seq
|
GTG
|
|
13
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
51292
|
261
|
ATG ...
|
MRA ...
|
Ribo-seq
|
ATG
|
|
13
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
16922
|
69
|
TTG ...
|
LWM ...
|
Ribo-seq
|
TTG
|
|
18
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
9189
|
72
|
ATG ...
|
MKR ...
|
Ribo-seq
|
ATG
|
moderate
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
1871
|
93
|
ATG ...
|
MMR ...
|
Ribo-seq
|
ATG
|
|
16
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
BMDC,
Brain,
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
968410
|
192
|
TTG ...
|
LEV ...
|
Ribo-seq
|
TTG
|
|
5
|
sORFs_org_Mouse
|
|
BMDC,
E14,
MEF,
R1E,
v6-5
|
12753
|
135
|
GTG ...
|
VWL ...
|
Ribo-seq
|
GTG
|
|
9
|
sORFs_org_Mouse
|
|
E14,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
15813
|
150
|
CTG ...
|
LMQ ...
|
Ribo-seq
|
CTG
|
|
14
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
739346
|
30
|
ATG ...
|
MAN ...
|
Ribo-seq
|
ATG
|
|
9
|
sORFs_org_Mouse
Johnstone2016
|
|
3T3,
BMDC,
Brain,
E14,
Glioma,
Liver,
MEF,
MESC,
NSC,
v6-5
|
84438
|
198
|
ATG ...
|
MEK ...
|
Ribo-seq
|
ATG
|
|
2
|
sORFs_org_Mouse
|
|
MEF,
v6-5
|
813256
|
243
|
GTG ...
|
VEA ...
|
Ribo-seq
|
GTG
|
|
4
|
sORFs_org_Mouse
|
|
B_cell,
MEF,
R1E,
v6-5
|
1567
|
63
|
ATG ...
|
MSE ...
|
Ribo-seq
|
ATG
|
|
20
|
sORFs_org_Mouse
|
|
B_cell,
BMDC,
Brain,
C2C12,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
Spleen_B_cell,
Testis,
v6-5
|
90377
|
75
|
GTG ...
|
VWL ...
|
Ribo-seq
|
GTG
|
weak
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
46414
|
231
|
CTG ...
|
LAK ...
|
Ribo-seq
|
CTG
|
|
15
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
975776
|
81
|
AGG ...
|
RQK ...
|
Ribo-seq
|
AGG
|
moderate
|
1
|
sORFs_org_Mouse
|
|
MEF
|
976097
|
72
|
ATT ...
|
IRE ...
|
Ribo-seq
|
ATT
|
|
2
|
sORFs_org_Mouse
|
|
E14,
MEF
|
975462
|
216
|
AAG ...
|
KSF ...
|
Ribo-seq
|
AAG
|
weak
|
1
|
sORFs_org_Mouse
|
|
MEF
|
1222731
|
129
|
AAG ...
|
KKS ...
|
Ribo-seq
|
AAG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
45256
|
81
|
TTG ...
|
LRK ...
|
Ribo-seq
|
TTG
|
|
14
|
sORFs_org_Mouse
|
|
3T3,
B_cell,
Brain,
E14,
Liver,
MEF,
Neutrophil,
NSC,
R1E,
Spleen_B_cell,
Testis,
v6-5
|
1208187
|
162
|
AAG ...
|
KQL ...
|
Ribo-seq
|
AAG
|
|
1
|
sORFs_org_Mouse
|
|
E14
|
14170
|
63
|
CTG ...
|
LER ...
|
Ribo-seq
|
CTG
|
|
9
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
Skin_tumor,
v6-5
|
413330
|
63
|
TTG ...
|
LYV ...
|
Ribo-seq
|
TTG
|
weak
|
8
|
sORFs_org_Mouse
|
|
Brain,
MEF,
Neutrophil,
NSC,
R1E,
v6-5
|
1049184
|
39
|
TTG ...
|
LWM ...
|
Ribo-seq
|
TTG
|
|
8
|
sORFs_org_Mouse
|
| |