Transcript 402413

Transcript

ID CARD

MetamORF ID

402413

ENSMUST00000185785

Name

Ncl-203

Strand

Biotype

protein_coding

Start-end positions

86357312-86358969

CDS Start-stop positions

-86358193

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:17975

Aliases

B530004O11Rik,
C23, D0Nds28, D1Nds28,
ENSMUSG00000026234, MGI:97286, NCBI:17975,
Ncl, Nucl, OFF:Ncl

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1294190	102	AGG ...	RPR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1191271	108	ACG ...	TVR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
24843	114	TTG ...	LSS ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1181488	30	AGG ...	RQK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
514944	36	CTG ...	LQF ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
456429	120	CTG ...	LAK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
844110	105	GTG ...	VRP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC
1611377	39	ATG ...	MDT ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	MEF, R1E
666655	48	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	R1E
661607	90	GTG ...	VGM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	R1E
719611	60	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF, R1E
695102	63	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E
678853	84	ATG ...	MDG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	sORF	E14, MEF, R1E
417566	96	AAG ...	KAK ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF	E14
697245	54	CTG ...	LPV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF, R1E
479573	57	TTG ...	LFH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5

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