Transcript 449600

Transcript

ID CARD

MetamORF ID

449600

ENSMUST00000188682

Name

Ncl-205

Strand

Biotype

retained_intron

Start-end positions

86350496-86351211

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:17975

Aliases

B530004O11Rik,
C23, D0Nds28, D1Nds28,
ENSMUSG00000026234, MGI:97286, NCBI:17975,
Ncl, Nucl, OFF:Ncl

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
955190	63	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
30697	228	ATG ...	MPK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
31613	93	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell
40534	135	TTG ...	LVV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
26399	123	GTG ...	VEA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1299102	30	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
26826	141	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
79696	219	CTG ...	LPR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
30323	147	GTG ...	VKV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
1188597	177	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
84438	198	ATG ...	MEK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1289358	33	AAG ...	KPQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1302905	42	AGG ...	RWI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
20290	237	GTG ...	VRK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
29502	189	TTG ...	LTE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
87324	132	GTG ...	VVE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1290600	216	ATT ...	IDG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
34881	195	TTG ...	LDW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil
1195171	57	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1260754	42	AGG ...	RGR ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1292084	69	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
949811	51	AGG ...	RWK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1188657	87	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1225399	210	AGG ...	RPW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1292356	186	ACG ...	TET ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1182831	36	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1293987	69	AGG ...	RRL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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