Transcript 42 | MetamORF

Transcript

ID CARD

MetamORF ID

ENSMUST00000027438

Name

Ncl-201

Strand

Biotype

protein_coding

Start-end positions

86344719-86359400

CDS Start-stop positions

86350620-86359223

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:17975

Aliases

B530004O11Rik,
C23, D0Nds28, D1Nds28,
ENSMUSG00000026234, MGI:97286, NCBI:17975,
Ncl, Nucl, OFF:Ncl

Chr 1

ORFs

197 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
269	72	CTG ...	LLW ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1221846	69	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
46778	168	GTG ...	VKM ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
321784	141	CTG ...	LPL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
373240	60	TTG ...	LLK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1604182	57	ATG ...	MMM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
809753	216	TTG ...	LEE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, v6-5
9440	45	TTG ...	LLL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
975973	138	AGG ...	RKY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1210556	30	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
411368	30	CTG ...	LQS ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
967385	63	AGG ...	RWR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1222116	57	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
818482	222	GTG ...	VDL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, v6-5
327683	186	CTG ...	LHK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
810603	231	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, v6-5
1210253	48	AGG ...	RKN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
15603	123	ATG ...	MMR ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, Skin_tumor, Testis
55012	69	TTG ...	LRK ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
888430	162	TTG ...	LLI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
14619	117	ATG ...	MMR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
415800	93	ATG ...	MMK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, NSC
15835	63	ATG ...	MRK ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
46702	30	CTG ...	LVL ...	Ribo-seq	CTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
852393	141	CTG ...	LKL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
16160	111	TTG ...	LRA ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1042939	69	CTG ...	LRK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
2021	126	ATG ...	MRK ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
456429	120	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
9148	81	ATG ...	MMR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
33786	63	CTG ...	LSS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
14052	60	ATG ...	MMR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
15798	141	CTG ...	LRR ...	Ribo-seq	CTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
975918	42	AAG ...	KNT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
15723	78	ATG ...	MTK ...	Ribo-seq	ATG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1224383	138	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1063807	33	ATG ...	MSE ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
490520	282	GTG ...	VVE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
47542	114	CTG ...	LGR ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
844110	105	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1038157	159	GTG ...	VQQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
17013	108	TTG ...	LPS ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
16799	105	ATG ...	MDD ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
46267	168	TTG ...	LNL ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
895808	153	AAG ...	KLM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
419564	57	GTG ...	VAS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
8645	69	ATG ...	MRK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, v6-5
966846	75	AAG ...	KYL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
812990	114	ATG ...	MKM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC
15331	87	ATG ...	MRM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor, v6-5
1402	69	ATG ...	MMM ...	Ribo-seq	ATG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
971543	111	AAG ...	KMM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
491668	285	TTG ...	LVV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC, MEF, R1E, Spleen_B_cell, v6-5
15738	108	ATG ...	MTR ...	Ribo-seq	ATG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
968556	51	AGG ...	RWK ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
462307	117	CTG ...	LAG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
10733	87	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
50911	147	ATG ...	MQR ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
10687	42	TTG ...	LSK ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, Skin_tumor, v6-5
534980	39	TTG ...	LET ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E, v6-5
7932	42	CTG ...	LLW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
52736	246	GTG ...	VCV ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
51292	261	ATG ...	MRA ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
16922	69	TTG ...	LWM ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
9189	72	ATG ...	MKR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1871	93	ATG ...	MMR ...	Ribo-seq	ATG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
968410	192	TTG ...	LEV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
12753	135	GTG ...	VWL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
15813	150	CTG ...	LMQ ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
739346	30	ATG ...	MAN ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
84438	198	ATG ...	MEK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
813256	243	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, v6-5
1567	63	ATG ...	MSE ...	Ribo-seq	ATG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
90377	75	GTG ...	VWL ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
46414	231	CTG ...	LAK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
975776	81	AGG ...	RQK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
976097	72	ATT ...	IRE ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
975462	216	AAG ...	KSF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1222731	129	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
45256	81	TTG ...	LRK ...	Ribo-seq	TTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1208187	162	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
14170	63	CTG ...	LER ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
413330	63	TTG ...	LYV ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1049184	39	TTG ...	LWM ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
15829	75	TTG ...	LLL ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
971631	78	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
12755	81	CTG ...	LFH ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
49424	162	ATG ...	MKK ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
240	99	ATG ...	MRM ...	Ribo-seq	ATG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
42573	267	CTG ...	LKM ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
44393	291	GTG ...	VAL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
419608	57	GTG ...	VLQ ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1994	90	TTG ...	LLK ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
9413	129	CTG ...	LRR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
7679	90	ATG ...	MDD ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor
8795	30	ATG ...	MWT ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
416059	81	AAG ...	KDP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
479573	57	TTG ...	LFH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
13592	87	GTG ...	VMR ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1048127	69	TTG ...	LRA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC
514944	36	CTG ...	LQF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
433785	33	TTG ...	LLH ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, v6-5
833	150	CTG ...	LLL ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
16380	78	ATG ...	MRK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
975314	66	AGG ...	RMK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
13906	93	TTG ...	LMD ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
488967	297	GTG ...	VKV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell, v6-5
55482	144	ATG ...	MKM ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
30323	147	GTG ...	VKV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
967487	48	AGG ...	RSK ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
55272	156	CTG ...	LKL ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
11608	81	CTG ...	LPQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
975945	180	AAG ...	KQK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
14586	48	ATG ...	MRM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
857456	153	TTG ...	LNL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1064040	105	ATG ...	MPR ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, v6-5
16107	81	ATG ...	MIL ...	Ribo-seq	ATG		20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
2000	36	ATG ...	MMR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
898642	60	AGG ...	RKK ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
8770	78	ATG ...	MKM ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
808260	273	GTG ...	VEA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
978061	150	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
51966	216	GTG ...	VRP ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1331	147	GTG ...	VWL ...	Ribo-seq	GTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
79696	219	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
16920	66	ATG ...	MMR ...	Ribo-seq	ATG		16	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
16648	177	TTG ...	LLI ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
805749	105	ATG ...	MRK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC
1131	132	ATG ...	MRK ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis
971661	102	AGG ...	RMR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
11720	66	ATG ...	MTK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
9573	102	ATG ...	MKM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
304683	69	GTG ...	VNF ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1222842	63	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
527	153	CTG ...	LLL ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis
27697	96	TTG ...	LPQ ...	Ribo-seq	TTG	weak	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1051801	96	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Neutrophil, NSC
50776	198	TTG ...	LSC ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
44204	48	CTG ...	LER ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1613490	54	ATG ...	MMR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1458	108	TTG ...	LMD ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
16308	129	ATG ...	MMR ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
182	96	CTG ...	LFH ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
80	120	ATG ...	MRM ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Skin_tumor
11601	33	ATG ...	MRK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1208395	42	AGG ...	RWI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1212571	123	ATA ...	IKW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7828	57	ATG ...	MRM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
898339	36	ATA ...	IVR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1037866	132	ATG ...	MQR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1038645	33	CTG ...	LER ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, v6-5
15003	36	TTG ...	LVM ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1227696	219	ACG ...	TVR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1220875	87	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
15617	99	GTG ...	VNF ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
2017	144	CTG ...	LPQ ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1212857	36	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1227394	57	AAG ...	KRE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
345416	78	TTG ...	LPS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
44209	99	GTG ...	VQQ ...	Ribo-seq	GTG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
41	42	CTG ...	LIG ...	Ribo-seq	CTG		20	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
968768	132	ATT ...	IPV ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
10180	39	CTG ...	LLK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1756	90	ATG ...	MRK ...	Ribo-seq	ATG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1045429	45	ATG ...	MMR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
1222303	123	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
13987	114	ATG ...	MRK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
36085	48	CTG ...	LLA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, v6-5
11810	84	ATG ...	MRM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
12793	57	ATG ...	MIA ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
970828	90	AAG ...	KKL ...	Ribo-seq	AAG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
29502	189	TTG ...	LTE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
893018	171	ATA ...	IVK ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
972389	93	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
457603	51	ATG ...	MIL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF, Neutrophil, NSC, R1E, v6-5
26826	141	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
365531	156	CTG ...	LVK ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
975431	45	AGG ...	RMK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1489802	30	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
893842	213	AGG ...	RPR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
14155	96	ATG ...	MTR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, v6-5
10866	90	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, Skin_tumor, v6-5
12345	42	ATG ...	MKM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1209162	171	ATA ...	ILN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
413880	108	ATG ...	MMR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, C2C12, E14, MEF, Neutrophil, NSC
1208201	39	ATC ...	IGK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
976022	78	AGG ...	RKY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
16062	114	ATG ...	MKM ...	Ribo-seq	ATG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1214684	42	AAG ...	KAR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
15728	78	CTG ...	LER ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1044183	135	CTG ...	LMQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, NSC, R1E, v6-5
1861764	36	ATG ...	MTE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
24843	114	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54972	231	TTG ...	LSN ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, Testis
16021	63	ATG ...	MKM ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
15567	51	ATG ...	MKM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
32602	42	CTG ...	LIG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5

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