Transcript 20291 | MetamORF

Transcript

ID CARD

MetamORF ID

20291

ENSMUST00000186050

Name

Ncl-204

Strand

Biotype

retained_intron

Start-end positions

86350564-86352063

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:17975

Aliases

B530004O11Rik,
C23, D0Nds28, D1Nds28,
ENSMUSG00000026234, MGI:97286, NCBI:17975,
Ncl, Nucl, OFF:Ncl

Chr 1

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
939064	36	AAG ...	KVC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
34881	195	TTG ...	LDW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
79696	219	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
30323	147	GTG ...	VKV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
29502	189	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1538752	63	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
20290	237	GTG ...	VRK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
84438	198	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
32602	42	CTG ...	LIG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Testis
26826	141	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1686120	120	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
10687	42	TTG ...	LSK ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
1489802	30	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
26399	123	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
91252	102	CTG ...	LSE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
27910	117	CTG ...	LFV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
40534	135	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
87324	132	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
30697	228	ATG ...	MPK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
31613	93	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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