Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:12388

Aliases

AA409437
AU019353, Catns, Ctnnd
Ctnnd1, ENSMUSG00000034101, MGI:105100
mKIAA0384, NCBI:12388, OFF:Ctnnd1
P120

Chromosome

2

Transcripts

241 ORFs
23 known transcripts
704 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1165848 45

CTG ...

LLW ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
106751 45

TTG ...

LCL ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740944 42

GTG ...

VWT ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1169209 198

TTG ...

LYF ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
E14, MEF, v6-5
1212905 78

AGG ...

RIV ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
730762 156

GTG ...

VFA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1212202 120

ATC ...

IVK ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
736472 168

TTG ...

LWR ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
99036 57

GTG ...

VEL ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
1211880 171

AGG ...

RES ...

Ribo-seq
AGG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1637910 225

GTG ...

VLD ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
1216892 225

AGG ...

RRP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
731686 48

CTG ...

LPK ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
15671 60

ATG ...

MPS ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
v6-5
966561 117

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
730424 33

CTG ...

LSS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745612 75

ATG ...

MIA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
969947 30

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
    Upstream
E14
730220 144

ATG ...

MGA ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1724412 297

CTG ...

LPC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
50173 69

ATG ...

MVL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
737315 48

ATG ...

MVI ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
1208883 75

ATA ...

IGP ...

Ribo-seq
ATA

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1215990 96

AGG ...

RRT ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1217310 117

ATC ...

IVQ ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
124428 60

TTG ...

LRT ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
1206436 90

AGG ...

RRP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1211826 33

ATT ...

IFL ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
742773 87

CTG ...

LKE ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
v6-5
1162522 48

CTG ...

LPV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1210272 84

AGG ...

RRT ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
739721 36

CTG ...

LLF ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
1170326 63

CTG ...

LPV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745286 51

TTG ...

LNG ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
126142 96

CTG ...

LVG ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
119440 45

ATG ...

MGP ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
969142 111

ATG ...

MHL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1209147 84

CTG ...

LIM ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
730517 45

TTG ...

LVK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1215600 84

AAG ...

KEP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
745214 183

CTG ...

LPV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
966067 87

ATC ...

IPK ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
731193 114

CTG ...

LVG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
739304 42

CTG ...

LHT ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
746282 210

CTG ...

LWL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
733147 240

CTG ...

LSP ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
734092 39

TTG ...

LPP ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
728611 30

CTG ...

LGI ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
733238 117

GTG ...

VKS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1217194 255

ATC ...

IVK ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1207361 51

AGG ...

RKR ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1214451 72

ATA ...

IRS ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
743857 123

ATG ...

MIQ ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
970851 84

ATT ...

IHM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1165947 93

ATG ...

MKT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
965968 75

AGG ...

RKD ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1217223 129

AGG ...

RSQ ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
743367 291

GTG ...

VFA ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, v6-5
1212983 72

CTG ...

LPV ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
737274 60

CTG ...

LLF ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1217474 72

AAG ...

KTV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1209423 39

AGG ...

RWK ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1207178 39

AGG ...

RTD ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
737524 135

CTG ...

LVP ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
51385 84

TTG ...

LSC ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
735543 51

GTG ...

VFL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
967042 105

AGG ...

RQS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
412442 141

AGG ...

RER ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
744017 78

ATG ...

MMI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1215958 111

ATT ...

ISL ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
412100 96

ACG ...

TEG ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
734326 30

TTG ...

LLW ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
970530 99

ATT ...

ILV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
1215821 60

ATA ...

IRS ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1215925 45

ATC ...

IKN ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
727876 39

GTG ...

VKL ...

Ribo-seq
GTG

weak

6 sORFs_org_Mouse
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF, v6-5
746682 141

ATG ...

MAL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
746883 252

GTG ...

VKS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF, NSC,
v6-5
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
1207147 45

AGG ...

RRP ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
738702 33

ATG ...

MGP ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740200 135

ATG ...

MKL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1212506 39

AGG ...

RQK ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1216803 105

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1209121 42

ATT ...

ISA ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1208507 72

AAG ...

KEP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
412795 216

CTG ...

LRG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
1212658 282

CTG ...

LGA ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
E14, MEF
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
734500 57

TTG ...

LFL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
734233 66

ATG ...

MAD ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
115273 36

CTG ...

LWS ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
747035 117

ATG ...

MKL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
739874 42

GTG ...

VKR ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1214530 33

ATC ...

IWL ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
741496 171

TTG ...

LEP ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1207750 117

AGG ...

RSQ ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1208565 126

AAG ...

KFI ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1207336 90

AAG ...

KTV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
966837 117

ATT ...

ILV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
743474 195

CTG ...

LGH ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1645501 159

CTG ...

LKT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
103647 33

TTG ...

LDV ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1208052 75

CTG ...

LWL ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
1207070 39

GTG ...

VKP ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
743371 108

ATG ...

MHL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1213467 156

ATC ...

ITT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
738695 48

ATG ...

MQL ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1208875 36

AGG ...

RCR ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
732469 57

GTG ...

VMV ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1216724 186

ACG ...

TLP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1162031 60

CTG ...

LGH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
733122 54

ATG ...

MKM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
412585 60

ACG ...

TRK ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
120868 75

ATG ...

MKT ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1206505 54

ACG ...

TAG ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
49177 96

TTG ...

LSC ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
971813 135

AGG ...

RIQ ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
730454 51

GTG ...

VEA ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1162453 36

TTG ...

LEP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1210403 36

ACG ...

TCG ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1210819 60

ATC ...

ISH ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1213729 63

ATA ...

IVC ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1215637 261

AAG ...

KFI ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
969008 129

ATC ...

IVQ ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1210661 171

ATC ...

IKR ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
E14
1209589 129

AAG ...

KAG ...

Ribo-seq
AAG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
737110 36

ATG ...

MMG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
970879 240

AGG ...

RQS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1208889 51

ATA ...

IHP ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1170574 75

CTG ...

LEP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1206482 78

ATG ...

MVL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
731948 42

TTG ...

LVK ...

Ribo-seq
TTG

strong

7 sORFs_org_Mouse
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
743399 90

CTG ...

LLE ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
15426 63

TTG ...

LMP ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745866 54

TTG ...

LTG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1212673 84

AGG ...

RSG ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1214557 81

ATC ...

ILQ ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
15854 30

TTG ...

LGR ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
v6-5
412311 222

TTG ...

LDL ...

Ribo-seq
TTG

strong

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740176 60

CTG ...

LLS ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

124428 60

TTG ...

LRT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
412311 222

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
412442 141

AGG ...

RER ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
737274 60

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
739721 36

CTG ...

LLF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
733122 54

ATG ...

MKM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
738695 48

ATG ...

MQL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
740176 60

CTG ...

LLS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
742773 87

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
737110 36

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
734500 57

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
734233 66

ATG ...

MAD ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
747018 168

ATG ...

MSG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
743371 108

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
746460 180

ATG ...

MHW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
730948 33

ATG ...

MSM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
412179 126

AGG ...

REG ...

Ribo-seq
AGG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
743545 183

GTG ...

VMH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
412585 60

ACG ...

TRK ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
412795 216

CTG ...

LRG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
737315 48

ATG ...

MVI ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
412450 120

AAG ...

KIL ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
739304 42

CTG ...

LHT ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
412100 96

ACG ...

TEG ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1212983 72

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1879335 201

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
970955 270

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1877481 228

CTG ...

LWL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1165848 45

CTG ...

LLW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
49016 30

ATG ...

MAP ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E, Testis
50884 102

ATG ...

MPT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, R1E, Testis
740200 135

ATG ...

MKL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
733122 54

ATG ...

MKM ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
1162031 60

CTG ...

LGH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
730762 156

GTG ...

VFA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15854 30

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
747035 117

ATG ...

MKL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
731193 114

CTG ...

LVG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
1727617 135

GTG ...

VYF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    CDS
    sORF
MEF
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
730424 33

CTG ...

LSS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
412311 222

TTG ...

LDL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, R1E
733238 117

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
735543 51

GTG ...

VFL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
739874 42

GTG ...

VKR ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
99036 57

GTG ...

VEL ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
50173 69

ATG ...

MVL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
737110 36

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
746460 180

ATG ...

MHW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1170574 75

CTG ...

LEP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
743399 90

CTG ...

LLE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
50716 144

ATG ...

MSR ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, R1E, Testis
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
737315 48

ATG ...

MVI ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E, Testis
1208052 75

CTG ...

LWL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
15426 63

TTG ...

LMP ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
743857 123

ATG ...

MIQ ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
1878992 213

CTG ...

LGH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
746569 39

TTG ...

LRW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
R1E
119440 45

ATG ...

MGP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
727876 39

GTG ...

VKL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
730517 45

TTG ...

LVK ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
733147 240

CTG ...

LSP ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
1637910 225

GTG ...

VLD ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
730220 144

ATG ...

MGA ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
746682 141

ATG ...

MAL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
737524 135

CTG ...

LVP ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, R1E, Testis
16580 198

TTG ...

LYF ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
730454 51

GTG ...

VEA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
734500 57

TTG ...

LFL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
736472 168

TTG ...

LWR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
747018 168

ATG ...

MSG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
412795 216

CTG ...

LRG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
742773 87

CTG ...

LKE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
15671 60

ATG ...

MPS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
745866 54

TTG ...

LTG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
103647 33

TTG ...

LDV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
120868 75

ATG ...

MKT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
744017 78

ATG ...

MMI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
1209147 84

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
743371 108

ATG ...

MHL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
51385 84

TTG ...

LSC ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E, Testis
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
45717 51

ATG ...

MPT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, R1E, Testis
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Testis
740944 42

GTG ...

VWT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
734233 66

ATG ...

MAD ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
745612 75

ATG ...

MIA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
745286 51

TTG ...

LNG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
126142 96

CTG ...

LVG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
741652 186

TTG ...

LVM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
738702 33

ATG ...

MGP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1170326 63

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
740674 36

GTG ...

VAV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
731948 42

TTG ...

LVK ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
732469 57

GTG ...

VMV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1724412 297

CTG ...

LPC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
737274 60

CTG ...

LLF ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
1206482 78

ATG ...

MVL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1162522 48

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
45877 93

ATG ...

MSR ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, R1E, Testis
731686 48

CTG ...

LPK ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
743545 183

GTG ...

VMH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
49177 96

TTG ...

LSC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
1645501 159

CTG ...

LKT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
115273 36

CTG ...

LWS ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
1212658 282

CTG ...

LGA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
1879002 189

TTG ...

LEP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, R1E
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
737110 36

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743371 108

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
730112 39

TTG ...

LAG ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
733122 54

ATG ...

MKM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
738702 33

ATG ...

MGP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743246 102

ATG ...

MPT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
740674 36

GTG ...

VAV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
747035 117

ATG ...

MKL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
745866 54

TTG ...

LTG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
126142 96

CTG ...

LVG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
738862 102

GTG ...

VVH ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
730948 33

ATG ...

MSM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
120868 75

ATG ...

MKT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
730424 33

CTG ...

LSS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
119440 45

ATG ...

MGP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
731948 42

TTG ...

LVK ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC
733147 240

CTG ...

LSP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
734326 30

TTG ...

LLW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743857 123

ATG ...

MIQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
734500 57

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
739874 42

GTG ...

VKR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
740176 60

CTG ...

LLS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
737274 60

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
730762 156

GTG ...

VFA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
734092 39

TTG ...

LPP ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
15854 30

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
103647 33

TTG ...

LDV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
45877 93

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
738695 48

ATG ...

MQL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
729371 75

CTG ...

LRR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
737524 135

CTG ...

LVP ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
732469 57

GTG ...

VMV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
742773 87

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
728611 30

CTG ...

LGI ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
737315 48

ATG ...

MVI ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
740944 42

GTG ...

VWT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
735892 30

GTG ...

VTT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
746282 210

CTG ...

LWL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
735543 51

GTG ...

VFL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
15671 60

ATG ...

MPS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
745214 183

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743399 90

CTG ...

LLE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
99036 57

GTG ...

VEL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
744191 144

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
746682 141

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
730454 51

GTG ...

VEA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
727876 39

GTG ...

VKL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
743474 195

CTG ...

LGH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
49177 96

TTG ...

LSC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
730517 45

TTG ...

LVK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
740200 135

ATG ...

MKL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
739721 36

CTG ...

LLF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
45717 51

ATG ...

MPT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
15426 63

TTG ...

LMP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
730220 144

ATG ...

MGA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
739304 42

CTG ...

LHT ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
731686 48

CTG ...

LPK ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
736472 168

TTG ...

LWR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
745286 51

TTG ...

LNG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
16580 198

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
741496 171

TTG ...

LEP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
51385 84

TTG ...

LSC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743367 291

GTG ...

VFA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
734233 66

ATG ...

MAD ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
733238 117

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
745612 75

ATG ...

MIA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
731193 114

CTG ...

LVG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
744017 78

ATG ...

MMI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
49016 30

ATG ...

MAP ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
746883 252

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

744191 144

ATG ...

MSR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Liver
740176 60

CTG ...

LLS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
733147 240

CTG ...

LSP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
737524 135

CTG ...

LVP ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
730517 45

TTG ...

LVK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
738695 48

ATG ...

MQL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
45877 93

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
739721 36

CTG ...

LLF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
730220 144

ATG ...

MGA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
745286 51

TTG ...

LNG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1170326 63

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1212983 72

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
739874 42

GTG ...

VKR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1165848 45

CTG ...

LLW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
120868 75

ATG ...

MKT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
50173 69

ATG ...

MVL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
732469 57

GTG ...

VMV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
743246 102

ATG ...

MPT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
727876 39

GTG ...

VKL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
735543 51

GTG ...

VFL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
730948 33

ATG ...

MSM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1209147 84

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
739304 42

CTG ...

LHT ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

51189 201

GTG ...

VNL ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, R1E, Testis,
v6-5
742491 48

CTG ...

LGD ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
MEF, R1E, v6-5
16342 66

CTG ...

LDR ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, NSC,
R1E, Skin_tumor, Testis,
v6-5
746439 30

TTG ...

LKG ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, Liver,
MEF, NSC, R1E
16466 96

CTG ...

LNE ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis
746800 96

ATG ...

MHL ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
MEF, R1E, v6-5
745791 63

ATG ...

MIA ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
MEF, R1E
970726 72

ATT ...

IHM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
743410 42

TTG ...

LTG ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, R1E
747057 66

ATG ...

MMI ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
R1E
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

743474 195

CTG ...

LGH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
745214 183

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
743367 291

GTG ...

VFA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1168682 72

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
    Upstream
v6-5
733238 117

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
730220 144

ATG ...

MGA ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
730454 51

GTG ...

VEA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
730517 45

TTG ...

LVK ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
737315 48

ATG ...

MVI ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
746883 252

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
737524 135

CTG ...

LVP ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
744191 144

ATG ...

MSR ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
742773 87

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
734233 66

ATG ...

MAD ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1169489 81

ATG ...

MVY ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    sORF
    Upstream
v6-5
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
746282 210

CTG ...

LWL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
731111 87

TTG ...

LRS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
45877 93

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
733147 240

CTG ...

LSP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
736410 78

ATG ...

MNS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1170574 75

CTG ...

LEP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
743246 102

ATG ...

MPT ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
743399 90

CTG ...

LLE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
741496 171

TTG ...

LEP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
737274 60

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
740944 42

GTG ...

VWT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
740176 60

CTG ...

LLS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
734500 57

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
733122 54

ATG ...

MKM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
743857 123

ATG ...

MIQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
739721 36

CTG ...

LLF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

15233 102

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
15854 30

TTG ...

LGR ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
15426 63

TTG ...

LMP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
15671 60

ATG ...

MPS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
746569 39

TTG ...

LRW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
16580 198

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
15571 75

CTG ...

LKE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

967042 105

AGG ...

RQS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
970274 258

AGG ...

RQS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
966301 36

AAG ...

KLW ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
103647 33

TTG ...

LDV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
969008 129

ATC ...

IVQ ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
50716 144

ATG ...

MSR ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain, E14
117947 69

TTG ...

LFL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
49016 30

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
971303 120

ATA ...

IQW ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
970851 84

ATT ...

IHM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
969543 63

AGG ...

RTG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
738702 33

ATG ...

MGP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
45717 51

ATG ...

MPT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
740200 135

ATG ...

MKL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
746460 180

ATG ...

MHW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
966837 117

ATT ...

ILV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
731626 165

GTG ...

VIF ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
50884 102

ATG ...

MPT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain
747035 117

ATG ...

MKL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
118758 72

CTG ...

LLF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
971813 135

AGG ...

RIQ ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
745612 75

ATG ...

MIA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
970955 270

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
412442 141

AGG ...

RER ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
729545 51

CTG ...

LWR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
126142 96

CTG ...

LVG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
45877 93

ATG ...

MSR ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain
115273 36

CTG ...

LWS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
412100 96

ACG ...

TEG ...

Ribo-seq
ACG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
747018 168

ATG ...

MSG ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
743371 108

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
970530 99

ATT ...

ILV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
733238 117

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
736710 72

ATG ...

MGM ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
731948 42

TTG ...

LVK ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
120868 75

ATG ...

MKT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
965686 87

ATT ...

IHM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
106751 45

TTG ...

LCL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
970412 63

AGG ...

RTG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
965968 75

AGG ...

RKD ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
119440 45

ATG ...

MGP ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
966561 117

AAG ...

KKS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
99036 57

GTG ...

VEL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
412585 60

ACG ...

TRK ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
966067 87

ATC ...

IPK ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
969947 30

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
969142 111

ATG ...

MHL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
969413 174

ACG ...

TIK ...

Ribo-seq
ACG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
BMDC
121526 63

CTG ...

LWR ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1165848 45

CTG ...

LLW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1170326 63

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15233 102

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
16580 198

TTG ...

LYF ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
49016 30

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
731948 42

TTG ...

LVK ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
1170574 75

CTG ...

LEP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
16216 75

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
111567 36

ATG ...

MLT ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
117185 45

TTG ...

LWA ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
735543 51

GTG ...

VFL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
115273 36

CTG ...

LWS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
99036 57

GTG ...

VEL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
45717 51

ATG ...

MPT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
734950 45

TTG ...

LGL ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
1209147 84

CTG ...

LIM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
744191 144

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1212983 72

CTG ...

LPV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
100904 33

CTG ...

LTL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
16563 114

TTG ...

LWK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
727876 39

GTG ...

VKL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
MEF
103647 33

TTG ...

LDV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1206482 78

ATG ...

MVL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
970252 180

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
746720 39

CTG ...

LTL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
743246 102

ATG ...

MPT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
15936 39

CTG ...

LTC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
50173 69

ATG ...

MVL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

741652 186

TTG ...

LVM ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
747018 168

ATG ...

MSG ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
743545 183

GTG ...

VMH ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
51503 81

ATG ...

MAP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
746460 180

ATG ...

MHW ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
744191 144

ATG ...

MSR ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1680217 ENSMUST00000111693 Ctnnd1-219 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

738048 108

CTG ...

LPL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
727734 126

ATG ...

MWG ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
3007657 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

744191 144

ATG ...

MSR ...

Predicted
ATG

1 Samandi2017
    sORF
50716 144

ATG ...

MSR ...

Predicted
ATG

1 Samandi2017
    sORF
743371 108

ATG ...

MHL ...

Predicted
ATG

1 Samandi2017
    sORF
746800 96

ATG ...

MHL ...

Predicted
ATG

1 Samandi2017
    sORF
747035 117

ATG ...

MKL ...

Predicted
ATG

1 Samandi2017
    sORF
738361 150

ATG ...

MAM ...

Predicted
ATG

1 Samandi2017
    sORF
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

740280 54

ATG ...

MVF ...

Ribo-seq
ATG

strong

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
738361 150

ATG ...

MAM ...

Ribo-seq
ATG

strong

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
739202 54

ATG ...

MAD ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
744191 144

ATG ...

MSR ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
50173 69

ATG ...

MVL ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
123021 48

ATG ...

MMG ...

Ribo-seq
ATG

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
730948 33

ATG ...

MSM ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
746800 96

ATG ...

MHL ...

Ribo-seq
ATG

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
50716 144

ATG ...

MSR ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
741372 63

ATG ...

MLL ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
15223 66

ATG ...

MRE ...

Ribo-seq
ATG

weak

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
747035 117

ATG ...

MKL ...

Ribo-seq
ATG

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
982217 ENSMUST00000111692 Ctnnd1-218 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

740863 39

TTG ...

LFL ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1168697 33

TTG ...

LKG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
16213 69

CTG ...

LDR ...

Ribo-seq
CTG

11 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Skin_tumor,
Testis, v6-5
1216915 177

AAG ...

KKP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
46985 117

GTG ...

VVS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
1215678 276

ATC ...

INE ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
738862 102

GTG ...

VVH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
124428 60

TTG ...

LRT ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, MEF
1217221 210

AAG ...

KLV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
51426 51

CTG ...

LGD ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Testis,
v6-5
50577 267

GTG ...

VNL ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
v6-5
970601 84

AGG ...

RTG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1420222 102

CTG ...

LPC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
46405 105

TTG ...

LNT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
16537 99

CTG ...

LNE ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Skin_tumor, Testis, v6-5
1217520 225

ACG ...

TQG ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1215387 237

AAG ...

KLR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1215023 216

ATT ...

IEK ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
970879 240

AGG ...

RQS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
49877 297

GTG ...

VVS ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
729371 75

CTG ...

LRR ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
51422 285

TTG ...

LNT ...

Ribo-seq
TTG

11 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Testis, v6-5
741653 ENSMUST00000036811 Ctnnd1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

743545 183

GTG ...

VMH ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
746460 180

ATG ...

MHW ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
741652 186

TTG ...

LVM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
747018 168

ATG ...

MSG ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1546273 ENSMUST00000126092 Ctnnd1-225 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

729371 75

CTG ...

LRR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
738862 102

GTG ...

VVH ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

742491 48

CTG ...

LGD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
1217325 174

AAG ...

KKP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
46985 117

GTG ...

VVS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
47097 144

CTG ...

LQT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
48005 135

CTG ...

LNE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
47257 165

CTG ...

LPG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
46405 105

TTG ...

LNT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
16342 66

CTG ...

LDR ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver
49177 96

TTG ...

LSC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Testis
16466 96

CTG ...

LNE ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
Skin_tumor, v6-5
51716 264

GTG ...

VNL ...

Ribo-seq
GTG

11 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5
93869 ENSMUST00000131926 Ctnnd1-226 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

46405 105

TTG ...

LNT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
104800 177

TTG ...

LVK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
46985 117

GTG ...

VVS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
47257 165

CTG ...

LPG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
976731 ENSMUST00000111686 Ctnnd1-212 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
735967 30

CTG ...

LDL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
981926 ENSMUST00000111688 Ctnnd1-214 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
47438 114

CTG ...

LER ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Liver
1682272 ENSMUST00000111690 Ctnnd1-216 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

746569 39

TTG ...

LRW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
1011530 ENSMUST00000099941 Ctnnd1-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

740844 45

ATG ...

MTS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain

ORFs

241 ORFs
23 known transcripts
704 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

1165848 45

CTG...

LLW...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
124428 60

TTG...

LRT...

TTG Alternative
sORF
Upstream
ncRNA
Liver, E14, MEF,
Neutrophil, v6-5, 3T3,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
3 sORFs_org_Mouse
106751 45

TTG...

LCL...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
740944 42

GTG...

VWT...

GTG InCDS
Overlapping
sORF
E14, Liver, MEF,
NSC, v6-5, 3T3,
R1E, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1212983 72

CTG...

LPV...

CTG InCDS
Overlapping
sORF
MEF, E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
100904 33

CTG...

LTL...

CTG Alternative
InCDS
Overlapping
sORF
Upstream
3T3, Liver, Brain,
MEF, R1E, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
1879335 201

CTG...

LPV...

CTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
970955 270

GTG...

VKS...

GTG Alternative
InCDS
Overlapping
sORF
R1E, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
744191 144

ATG...

MSR...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, Liver,
Glioma, MEF, MESC,
Brain, E14, NSC,
v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
2 sORFs_org_Mouse
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
6 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1877481 228

CTG...

LWL...

CTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
746720 39

CTG...

LTL...

CTG Alternative
InCDS
Overlapping
sORF
Liver, BMDC, MEF,
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
737110 36

ATG...

MMG...

ATG Alternative
InCDS
Overlapping
sORF
3T3, R1E, Liver,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
1169209 198

TTG...

LYF...

TTG Overlapping
sORF
Upstream
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1212905 78

AGG...

RIV...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
743371 108

ATG...

MHL...

ATG InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC,
Brain, BMDC, R1E,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
730762 156

GTG...

VFA...

GTG InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
730112 39

TTG...

LAG...

TTG Alternative
sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412311 222

TTG...

LDL...

TTG Alternative
sORF
Upstream
C2C12, MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
733122 54

ATG...

MKM...

ATG InCDS
Overlapping
sORF
3T3, MEF, R1E,
Liver, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
51189 201

GTG...

VNL...

GTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, R1E, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
13 sORFs_org_Mouse
743474 195

CTG...

LGH...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
NSC, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
740176 60

CTG...

LLS...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, 3T3, Liver,
Brain, E14, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
738361 150

ATG...

MAM...

ATG InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, Brain,
BMDC, R1E,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
strong 1 Johnstone2016
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
strong 1 Johnstone2016
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
15233 102

TTG...

LWK...

TTG Alternative
InCDS
Overlapping
sORF
Skin_tumor, MEF, Liver,
R1E, 3T3, Brain,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1212202 120

ATC...

IVK...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
967042 105

AGG...

RQS...

AGG InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
970274 258

AGG...

RQS...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
736472 168

TTG...

LWR...

TTG InCDS
Overlapping
sORF
E14, MEF, v6-5,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
99036 57

GTG...

VEL...

GTG Alternative
InCDS
Overlapping
sORF
E14, Liver, MEF,
R1E, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
15571 75

CTG...

LKE...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
v6-5, R1E, 3T3,
Liver, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
1211880 171

AGG...

RES...

AGG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
733147 240

CTG...

LSP...

CTG InCDS
Overlapping
sORF
BMDC, 3T3, E14,
v6-5, MEF, R1E,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1637910 225

GTG...

VLD...

GTG Alternative
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1170326 63

CTG...

LPV...

CTG Alternative
InCDS
Overlapping
sORF
MEF, E14, v6-5,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
741652 186

TTG...

LVM...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
741653 ENSMUST00000036811 Ctnnd1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
734950 45

TTG...

LGL...

TTG Alternative
sORF
Upstream
BMDC, MEF, R1E,
E14, v6-5, Brain,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 5 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
966301 36

AAG...

KLW...

AAG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
49016 30

ATG...

MAP...

ATG Alternative
InCDS
Overlapping
sORF
MEF, R1E, Testis,
Brain, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
2 sORFs_org_Mouse
740280 54

ATG...

MVF...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, BMDC,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
strong 1 Johnstone2016
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
strong 1 Johnstone2016
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
412442 141

AGG...

RER...

AGG Alternative
sORF
Upstream
C2C12, BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
123021 48

ATG...

MMG...

ATG InCDS
Overlapping
sORF
E14, Liver, MEF,
R1E, Glioma, MESC,
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
1680217 ENSMUST00000111693 Ctnnd1-219 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
50884 102

ATG...

MPT...

ATG Alternative
Overlapping
sORF
Upstream
MEF, R1E, Testis,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1216892 225

AGG...

RRP...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
731686 48

CTG...

LPK...

CTG InCDS
Overlapping
sORF
E14, MEF, v6-5,
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
740200 135

ATG...

MKL...

ATG Alternative
InCDS
Overlapping
sORF
MEF, R1E, BMDC,
E14, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
738048 108

CTG...

LPL...

CTG InCDS
Overlapping
sORF
MEF, 3T3, Brain,
BMDC, E14, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1680217 ENSMUST00000111693 Ctnnd1-219 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
15671 60

ATG...

MPS...

ATG InCDS
Overlapping
sORF
E14, MEF, v6-5,
Skin_tumor, 3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
740863 39

TTG...

LFL...

TTG Alternative
sORF
Upstream
E14, Liver, MEF,
v6-5, BMDC, Brain,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
982217 ENSMUST00000111692 Ctnnd1-218 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
745214 183

CTG...

LPV...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
NSC, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
966561 117

AAG...

KKS...

AAG Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
730424 33

CTG...

LSS...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
737524 135

CTG...

LVP...

CTG InCDS
Overlapping
sORF
BMDC, Brain, E14,
v6-5, 3T3, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
738702 33

ATG...

MGP...

ATG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, E14,
MEF, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
743367 291

GTG...

VFA...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
NSC, R1E, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
741372 63

ATG...

MLL...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, BMDC, 3T3,
E14, NSC, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
weak 1 Johnstone2016
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1162031 60

CTG...

LGH...

CTG InCDS
Overlapping
sORF
R1E, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
1168682 72

CTG...

LSL...

CTG sORF
Upstream
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
729545 51

CTG...

LWR...

CTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, Brain,
BMDC, Liver, E14,
NSC, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
737274 60

CTG...

LLF...

CTG Alternative
InCDS
Overlapping
sORF
Liver, 3T3, E14,
MEF, NSC, v6-5,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
739202 54

ATG...

MAD...

ATG Alternative
InCDS
Overlapping
sORF
Liver, Glioma, MEF,
MESC, E14, NSC,
v6-5, BMDC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
103647 33

TTG...

LDV...

TTG Alternative
InCDS
Overlapping
sORF
Brain, 3T3, MEF,
E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
733238 117

GTG...

VKS...

GTG InCDS
Overlapping
sORF
Brain, R1E, E14,
MEF, v6-5, BMDC,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
743246 102

ATG...

MPT...

ATG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
v6-5, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
6 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
16580 198

TTG...

LYF...

TTG InCDS
Overlapping
sORF
MEF, R1E, Skin_tumor,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
745612 75

ATG...

MIA...

ATG InCDS
Overlapping
sORF
E14, MEF, BMDC,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
740674 36

GTG...

VAV...

GTG InCDS
Overlapping
sORF
3T3, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
15854 30

TTG...

LGR...

TTG InCDS
Overlapping
sORF
MEF, Skin_tumor, 3T3,
E14, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
747035 117

ATG...

MKL...

ATG InCDS
Overlapping
sORF
MEF, R1E, 3T3,
Glioma, Liver, MESC,
BMDC, E14, v6-5,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
731193 114

CTG...

LVG...

CTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
969947 30

AAG...

KST...

AAG sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
730220 144

ATG...

MGA...

ATG InCDS
Overlapping
sORF
E14, v6-5, Brain,
BMDC, MEF, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
736710 72

ATG...

MGM...

ATG InCDS
Overlapping
sORF
MEF, R1E, E14,
v6-5, Liver, Brain,
BMDC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1727617 135

GTG...

VYF...

GTG CDS
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
745866 54

TTG...

LTG...

TTG InCDS
Overlapping
sORF
3T3, MEF, R1E,
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
969008 129

ATC...

IVQ...

ATC Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
50716 144

ATG...

MSR...

ATG Alternative
Overlapping
sORF
Upstream
InCDS
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, R1E, Testis,
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
3 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
730517 45

TTG...

LVK...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, MEF, v6-5,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
126142 96

CTG...

LVG...

CTG InCDS
Overlapping
sORF
3T3, E14, MEF,
v6-5, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1724412 297

CTG...

LPC...

CTG sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
15223 66

ATG...

MRE...

ATG InCDS
Overlapping
sORF
MEF, R1E, 3T3,
Brain, Glioma, Liver,
MESC, E14, NSC,
v6-5, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
weak 1 Johnstone2016
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
742491 48

CTG...

LGD...

CTG ncRNA
sORF
3T3, Brain, E14,
MEF, R1E, v6-5,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
6 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
50173 69

ATG...

MVL...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
Testis, Glioma, Liver,
MESC, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
737315 48

ATG...

MVI...

ATG InCDS
Overlapping
sORF
v6-5, Brain, MEF,
R1E, 3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
118758 72

CTG...

LLF...

CTG InCDS
Overlapping
sORF
E14, Liver, MEF,
NSC, v6-5, Brain,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
117947 69

TTG...

LFL...

TTG InCDS
Overlapping
sORF
Brain, E14, Liver,
MEF, NSC, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
735967 30

CTG...

LDL...

CTG Alternative
sORF
Upstream
Liver, 3T3, E14,
MEF, NSC, v6-5,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
976731 ENSMUST00000111686 Ctnnd1-212 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1208883 75

ATA...

IGP...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1215990 96

AGG...

RRT...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1217310 117

ATC...

IVQ...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
736410 78

ATG...

MNS...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, R1E, Brain,
v6-5, E14, Liver,
MEF, NSC, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
738695 48

ATG...

MQL...

ATG Alternative
InCDS
Overlapping
sORF
BMDC, Liver, 3T3,
E14, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
1206436 90

AGG...

RRP...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
731111 87

TTG...

LRS...

TTG InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, 3T3, Liver,
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
738862 102

GTG...

VVH...

GTG Alternative
Overlapping
sORF
Upstream
ncRNA
3T3, Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1546273 ENSMUST00000126092 Ctnnd1-225 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1211826 33

ATT...

IFL...

ATT InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1168697 33

TTG...

LKG...

TTG ncRNA
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
2 sORFs_org_Mouse
740844 45

ATG...

MTS...

ATG InCDS
Overlapping
sORF
MEF, Glioma, Liver,
MESC, R1E, 3T3,
E14, NSC, v6-5,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
981926 ENSMUST00000111688 Ctnnd1-214 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
1011530 ENSMUST00000099941 Ctnnd1-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
742773 87

CTG...

LKE...

CTG InCDS
Overlapping
sORF
E14, Liver, MEF,
v6-5, Brain, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
730948 33

ATG...

MSM...

ATG InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1162522 48

CTG...

LPV...

CTG InCDS
Overlapping
sORF
E14, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
16213 69

CTG...

LDR...

CTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Skin_tumor,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
11 sORFs_org_Mouse
120868 75

ATG...

MKT...

ATG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1210272 84

AGG...

RRT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
739721 36

CTG...

LLF...

CTG Alternative
InCDS
Overlapping
sORF
E14, NSC, Liver,
BMDC, 3T3, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
16342 66

CTG...

LDR...

CTG ncRNA
sORF
Brain, MEF, NSC,
R1E, Skin_tumor, Testis,
v6-5, 3T3, E14,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
7 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
6 sORFs_org_Mouse
745286 51

TTG...

LNG...

TTG InCDS
Overlapping
sORF
E14, MEF, v6-5,
BMDC, R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
47438 114

CTG...

LER...

CTG Alternative
sORF
Upstream
MEF, 3T3, E14,
Liver, NSC, v6-5,
R1E, Testis, BMDC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1680217 ENSMUST00000111693 Ctnnd1-219 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 7 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
976731 ENSMUST00000111686 Ctnnd1-212 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
981926 ENSMUST00000111688 Ctnnd1-214 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45877 93

ATG...

MSR...

ATG Alternative
InCDS
Overlapping
sORF
Upstream
BMDC, 3T3, Brain,
MEF, R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
747018 168

ATG...

MSG...

ATG Alternative
InCDS
Overlapping
sORF
MEF, NSC, v6-5,
E14, Brain, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
741653 ENSMUST00000036811 Ctnnd1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
971303 120

ATA...

IQW...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
119440 45

ATG...

MGP...

ATG InCDS
Overlapping
sORF
E14, Liver, MEF,
3T3, R1E, BMDC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
970851 84

ATT...

IHM...

ATT InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1216915 177

AAG...

KKP...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
969142 111

ATG...

MHL...

ATG Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
731948 42

TTG...

LVK...

TTG sORF
Upstream
3T3, BMDC, MEF,
E14, Liver, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 7 sORFs_org_Mouse
730454 51

GTG...

VEA...

GTG InCDS
Overlapping
sORF
Brain, MEF, 3T3,
E14, Liver, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
15936 39

CTG...

LTC...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, Skin_tumor, Brain,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1209147 84

CTG...

LIM...

CTG InCDS
Overlapping
sORF
E14, MEF, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
743545 183

GTG...

VMH...

GTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
3T3, Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
741653 ENSMUST00000036811 Ctnnd1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
969543 63

AGG...

RTG...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215600 84

AAG...

KEP...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
734326 30

TTG...

LLW...

TTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
45717 51

ATG...

MPT...

ATG Alternative
Overlapping
sORF
Upstream
InCDS
Brain, MEF, R1E,
Testis, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
2 sORFs_org_Mouse
1170574 75

CTG...

LEP...

CTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, Brain,
E14, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
743857 123

ATG...

MIQ...

ATG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
NSC, v6-5, R1E,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
735543 51

GTG...

VFL...

GTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
16216 75

CTG...

LIM...

CTG Alternative
InCDS
Overlapping
sORF
MEF, BMDC, Skin_tumor,
E14, v6-5, Testis,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
111567 36

ATG...

MLT...

ATG Alternative
InCDS
Overlapping
sORF
Upstream
MEF, R1E, E14,
Liver, Neutrophil, v6-5,
Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
739874 42

GTG...

VKR...

GTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, 3T3,
BMDC, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
729371 75

CTG...

LRR...

CTG ncRNA
sORF
Alternative
Overlapping
Upstream
Brain, 3T3, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1546273 ENSMUST00000126092 Ctnnd1-225 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
966067 87

ATC...

IPK...

ATC Alternative
InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
746460 180

ATG...

MHW...

ATG Alternative
InCDS
Overlapping
sORF
E14, R1E, Brain,
MEF, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
741653 ENSMUST00000036811 Ctnnd1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
966837 117

ATT...

ILV...

ATT Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
51503 81

ATG...

MAP...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Liver, MEF,
R1E, Testis, Brain,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1168392 ENSMUST00000067232 Ctnnd1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
5 sORFs_org_Mouse
46985 117

GTG...

VVS...

GTG ncRNA
sORF
Neutrophil, Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
93869 ENSMUST00000131926 Ctnnd1-226 processed_transcript Ribo-seq
1 sORFs_org_Mouse
739304 42

CTG...

LHT...

CTG Alternative
InCDS
Overlapping
sORF
E14, Liver, MEF,
NSC, v6-5, BMDC,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
731626 165

GTG...

VIF...

GTG InCDS
Overlapping
sORF
BMDC, 3T3, MEF,
R1E, Brain, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
746282 210

CTG...

LWL...

CTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
734500 57

TTG...

LFL...

TTG Alternative
InCDS
Overlapping
sORF
3T3, Liver, MEF,
R1E, E14, NSC,
v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
734092 39

TTG...

LPP...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
738178 48

ATG...

MIQ...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, 3T3, R1E,
BMDC, E14, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
weak 1 Johnstone2016
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
weak 1 Johnstone2016
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
728611 30

CTG...

LGI...

CTG InCDS
Overlapping
sORF
MEF, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1217194 255

ATC...

IVK...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
746439 30

TTG...

LKG...

TTG ncRNA
sORF
3T3, E14, Liver,
MEF, NSC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
6 sORFs_org_Mouse
746883 252

GTG...

VKS...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
NSC, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
117185 45

TTG...

LWA...

TTG Alternative
InCDS
Overlapping
sORF
Upstream
MEF, E14, Liver,
Neutrophil, v6-5, Brain,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1207361 51

AGG...

RKR...

AGG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1214451 72

ATA...

IRS...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215678 276

ATC...

INE...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
743399 90

CTG...

LLE...

CTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, 3T3,
Brain, E14, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
15426 63

TTG...

LMP...

TTG InCDS
Overlapping
sORF
Skin_tumor, MEF, R1E,
3T3, E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1165947 93

ATG...

MKT...

ATG Alternative
InCDS
Overlapping
sORF
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
965968 75

AGG...

RKD...

AGG Alternative
sORF
Upstream
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
727734 126

ATG...

MWG...

ATG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
MEF, R1E, E14,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1680217 ENSMUST00000111693 Ctnnd1-219 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
1217223 129

AGG...

RSQ...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
16466 96

CTG...

LNE...

CTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Testis, BMDC,
Skin_tumor, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
10 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
7 sORFs_org_Mouse
734233 66

ATG...

MAD...

ATG InCDS
Overlapping
sORF
Brain, Liver, v6-5,
MEF, R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1217474 72

AAG...

KTV...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1208052 75

CTG...

LWL...

CTG InCDS
Overlapping
sORF
R1E, E14, MEF,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1209423 39

AGG...

RWK...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
971813 135

AGG...

RIQ...

AGG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1217325 174

AAG...

KKP...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1169489 81

ATG...

MVY...

ATG sORF
Upstream
v6-5, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
2862157 ENSMUST00000189772 Gm28635-201 protein_coding Ribo-seq
1 Johnstone2016
1207178 39

AGG...

RTD...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
121526 63

CTG...

LWR...

CTG InCDS
Overlapping
sORF
Brain, Liver, R1E,
3T3, BMDC, E14,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
2 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
115273 36

CTG...

LWS...

CTG InCDS
Overlapping
sORF
MEF, Brain, E14,
Liver, NSC, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1878992 213

CTG...

LGH...

CTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
51385 84

TTG...

LSC...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, R1E, Testis,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
3 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
746569 39

TTG...

LRW...

TTG Alternative
sORF
Upstream
R1E, 3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
1682272 ENSMUST00000111690 Ctnnd1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
744017 78

ATG...

MMI...

ATG InCDS
Overlapping
sORF
E14, MEF, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
727876 39

GTG...

VKL...

GTG sORF
Upstream
MEF, E14, Liver,
NSC, v6-5, BMDC,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1215958 111

ATT...

ISL...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
412100 96

ACG...

TEG...

ACG Alternative
sORF
Upstream
E14, BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
970530 99

ATT...

ILV...

ATT InCDS
Overlapping
sORF
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215821 60

ATA...

IRS...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215925 45

ATC...

IKN...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
732469 57

GTG...

VMV...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
863324 ENSMUST00000111694 Ctnnd1-220 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1217221 210

AAG...

KLV...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
746682 141

ATG...

MAL...

ATG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
746800 96

ATG...

MHL...

ATG InCDS
Overlapping
sORF
ncRNA
Glioma, Liver, MEF,
MESC, 3T3,
Brain, E14, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2862233 ENSMUST00000066177 Ctnnd1-202 protein_coding Ribo-seq
1 Johnstone2016
3007657 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
7 sORFs_org_Mouse
51426 51

CTG...

LGD...

CTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
7 sORFs_org_Mouse
47097 144

CTG...

LQT...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
50577 267

GTG...

VNL...

GTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
13 sORFs_org_Mouse
46405 105

TTG...

LNT...

TTG ncRNA
sORF
Brain, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

93869 ENSMUST00000131926 Ctnnd1-226 processed_transcript Ribo-seq
1 sORFs_org_Mouse
16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1207147 45

AGG...

RRP...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
104800 177

TTG...

LVK...

TTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

93869 ENSMUST00000131926 Ctnnd1-226 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1212506 39

AGG...

RQK...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1216803 105

AAG...

KKS...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
735892 30

GTG...

VTT...

GTG InCDS
Overlapping
sORF
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
48005 135

CTG...

LNE...

CTG ncRNA
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
412795 216

CTG...

LRG...

CTG Alternative
sORF
Upstream
MEF, E14, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
970601 84

AGG...

RTG...

AGG ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1420222 102

CTG...

LPC...

CTG ncRNA
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1209121 42

ATT...

ISA...

ATT InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1208507 72

AAG...

KEP...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
47257 165

CTG...

LPG...

CTG ncRNA
sORF
Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
93869 ENSMUST00000131926 Ctnnd1-226 processed_transcript Ribo-seq
1 sORFs_org_Mouse
16563 114

TTG...

LWK...

TTG InCDS
Overlapping
sORF
MEF, E14, NSC,
v6-5, Brain, R1E,
3T3, Skin_tumor, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
15224 ENSMUST00000111687 Ctnnd1-213 protein_coding Ribo-seq
1 sORFs_org_Mouse
412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
1 sORFs_org_Mouse
412179 126

AGG...

REG...

AGG Alternative
sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1212658 282

CTG...

LGA...

CTG sORF
Upstream
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
412585 60

ACG...

TRK...

ACG Alternative
sORF
Upstream
C2C12, E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1214530 33

ATC...

IWL...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
16537 99

CTG...

LNE...

CTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Skin_tumor, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
15 sORFs_org_Mouse
1217520 225

ACG...

TQG...

ACG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
741496 171

TTG...

LEP...

TTG Alternative
InCDS
Overlapping
sORF
E14, MEF, NSC,
v6-5, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
1163076 ENSMUST00000111696 Ctnnd1-222 protein_coding Ribo-seq
1 sORFs_org_Mouse
727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
1207750 117

AGG...

RSQ...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1208565 126

AAG...

KFI...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
965686 87

ATT...

IHM...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1207336 90

AAG...

KTV...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1206482 78

ATG...

MVL...

ATG InCDS
Overlapping
sORF
MEF, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
1645501 159

CTG...

LKT...

CTG Alternative
InCDS
Overlapping
sORF
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
49177 96

TTG...

LSC...

TTG Alternative
InCDS
Overlapping
sORF
ncRNA
3T3, Testis, E14,
MEF, NSC, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

727735 ENSMUST00000111695 Ctnnd1-221 protein_coding Ribo-seq
1 sORFs_org_Mouse
16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
2 sORFs_org_Mouse
745791 63

ATG...

MIA...

ATG ncRNA
sORF
3T3, BMDC, E14,
MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
5 sORFs_org_Mouse
970412 63

AGG...

RTG...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215387 237

AAG...

KLR...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1207070 39

GTG...

VKP...

GTG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1213467 156

ATC...

ITT...

ATC Alternative
Overlapping
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1215023 216

ATT...

IEK...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1208875 36

AGG...

RCR...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1216724 186

ACG...

TLP...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
970879 240

AGG...

RQS...

AGG ncRNA
sORF
Alternative
InCDS
Overlapping
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
970726 72

ATT...

IHM...

ATT ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
1 sORFs_org_Mouse
49877 297

GTG...

VVS...

GTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
13 sORFs_org_Mouse
1206505 54

ACG...

TAG...

ACG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1162453 36

TTG...

LEP...

TTG InCDS
Overlapping
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
1210403 36

ACG...

TCG...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
970252 180

AAG...

KST...

AAG Alternative
Overlapping
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

970253 ENSMUST00000111697 Ctnnd1-223 protein_coding Ribo-seq
1 sORFs_org_Mouse
1210819 60

ATC...

ISH...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1213729 63

ATA...

IVC...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1215637 261

AAG...

KFI...

AAG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
51716 264

GTG...

VNL...

GTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16467 ENSMUST00000150940 Ctnnd1-230 processed_transcript Ribo-seq
11 sORFs_org_Mouse
1210661 171

ATC...

IKR...

ATC sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1209589 129

AAG...

KAG...

AAG Alternative
sORF
Upstream
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1208889 51

ATA...

IHP...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
743410 42

TTG...

LTG...

TTG ncRNA
sORF
3T3, E14, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
3 sORFs_org_Mouse
747057 66

ATG...

MMI...

ATG ncRNA
sORF
3T3, E14, MEF,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16343 ENSMUST00000141151 Ctnnd1-227 processed_transcript Ribo-seq
4 sORFs_org_Mouse
51422 285

TTG...

LNT...

TTG ncRNA
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

16214 ENSMUST00000145312 Ctnnd1-228 processed_transcript Ribo-seq
11 sORFs_org_Mouse
412450 120

AAG...

KIL...

AAG Alternative
sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

412101 ENSMUST00000111678 Ctnnd1-209 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1212673 84

AGG...

RSG...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
969413 174

ACG...

TIK...

ACG sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

94767 ENSMUST00000111684 Ctnnd1-210 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1214557 81

ATC...

ILQ...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1052011 ENSMUST00000111676 Ctnnd1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1879002 189

TTG...

LEP...

TTG Alternative
InCDS
Overlapping
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

45718 ENSMUST00000111689 Ctnnd1-215 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5