Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1052011

ID

ENSMUST00000111676

Name

Ctnnd1-207

Strand

-

Biotype

protein_coding

Start-end positions

84600071-84650745

CDS Start-stop positions

84602892-84620951

CDS Relative positions

-

Sequences

Transcript sequence

CTG ...

Gene

ID

NCBI:12388

Aliases

AA409437,
AU019353, Catns, Ctnnd,
Ctnnd1, ENSMUSG00000034101, MGI:105100,
mKIAA0384, NCBI:12388, OFF:Ctnnd1,
P120


Chr 2

ORFs

170 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1165848 45

CTG ...

LLW ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
106751 45

TTG ...

LCL ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740944 42

GTG ...

VWT ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1169209 198

TTG ...

LYF ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
E14, MEF, v6-5
1212905 78

AGG ...

RIV ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
730762 156

GTG ...

VFA ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1212202 120

ATC ...

IVK ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
736472 168

TTG ...

LWR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
99036 57

GTG ...

VEL ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
1211880 171

AGG ...

RES ...

Ribo-seq
AGG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1637910 225

GTG ...

VLD ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
123021 48

ATG ...

MMG ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
1216892 225

AGG ...

RRP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
731686 48

CTG ...

LPK ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
15671 60

ATG ...

MPS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740863 39

TTG ...

LFL ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
v6-5
966561 117

AAG ...

KKS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
730424 33

CTG ...

LSS ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
15571 75

CTG ...

LKE ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745612 75

ATG ...

MIA ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
969947 30

AAG ...

KST ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    sORF
    Upstream
E14
730220 144

ATG ...

MGA ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1724412 297

CTG ...

LPC ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    sORF
    Upstream
MEF
50173 69

ATG ...

MVL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
737315 48

ATG ...

MVI ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
118758 72

CTG ...

LLF ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
117947 69

TTG ...

LFL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
1208883 75

ATA ...

IGP ...

Ribo-seq
ATA strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1215990 96

AGG ...

RRT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1217310 117

ATC ...

IVQ ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
124428 60

TTG ...

LRT ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
1206436 90

AGG ...

RRP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
731111 87

TTG ...

LRS ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1211826 33

ATT ...

IFL ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
742773 87

CTG ...

LKE ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
v6-5
1162522 48

CTG ...

LPV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1210272 84

AGG ...

RRT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
739721 36

CTG ...

LLF ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
1170326 63

CTG ...

LPV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745286 51

TTG ...

LNG ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
126142 96

CTG ...

LVG ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
119440 45

ATG ...

MGP ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
969142 111

ATG ...

MHL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
15936 39

CTG ...

LTC ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1209147 84

CTG ...

LIM ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
730517 45

TTG ...

LVK ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1215600 84

AAG ...

KEP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
745214 183

CTG ...

LPV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
966067 87

ATC ...

IPK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
731193 114

CTG ...

LVG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
739304 42

CTG ...

LHT ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
746282 210

CTG ...

LWL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
733147 240

CTG ...

LSP ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
734092 39

TTG ...

LPP ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
728611 30

CTG ...

LGI ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
733238 117

GTG ...

VKS ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1217194 255

ATC ...

IVK ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
736710 72

ATG ...

MGM ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1207361 51

AGG ...

RKR ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1214451 72

ATA ...

IRS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
739202 54

ATG ...

MAD ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
743857 123

ATG ...

MIQ ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
970851 84

ATT ...

IHM ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1165947 93

ATG ...

MKT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
117185 45

TTG ...

LWA ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
965968 75

AGG ...

RKD ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1217223 129

AGG ...

RSQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
743367 291

GTG ...

VFA ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, v6-5
1212983 72

CTG ...

LPV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
737274 60

CTG ...

LLF ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1217474 72

AAG ...

KTV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1209423 39

AGG ...

RWK ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1207178 39

AGG ...

RTD ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
737524 135

CTG ...

LVP ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
51385 84

TTG ...

LSC ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
735543 51

GTG ...

VFL ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
967042 105

AGG ...

RQS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
412442 141

AGG ...

RER ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
744017 78

ATG ...

MMI ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1215958 111

ATT ...

ISL ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
412100 96

ACG ...

TEG ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
734326 30

TTG ...

LLW ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
970530 99

ATT ...

ILV ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
47438 114

CTG ...

LER ...

Ribo-seq
CTG strong 7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
1215821 60

ATA ...

IRS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1215925 45

ATC ...

IKN ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
727876 39

GTG ...

VKL ...

Ribo-seq
GTG weak 6 sORFs_org_Mouse
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
15233 102

TTG ...

LWK ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
734950 45

TTG ...

LGL ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF, v6-5
746682 141

ATG ...

MAL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
746883 252

GTG ...

VKS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
735967 30

CTG ...

LDL ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF, NSC,
v6-5
111567 36

ATG ...

MLT ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
1207147 45

AGG ...

RRP ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
738702 33

ATG ...

MGP ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740200 135

ATG ...

MKL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1212506 39

AGG ...

RQK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1216803 105

AAG ...

KKS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1209121 42

ATT ...

ISA ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1208507 72

AAG ...

KEP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
16216 75

CTG ...

LIM ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
412795 216

CTG ...

LRG ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF
736410 78

ATG ...

MNS ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
1212658 282

CTG ...

LGA ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    sORF
    Upstream
E14, MEF
16563 114

TTG ...

LWK ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
741372 63

ATG ...

MLL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
734500 57

TTG ...

LFL ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
734233 66

ATG ...

MAD ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
100904 33

CTG ...

LTL ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, Liver, MEF,
Neutrophil, v6-5
115273 36

CTG ...

LWS ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
747035 117

ATG ...

MKL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
739874 42

GTG ...

VKR ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1214530 33

ATC ...

IWL ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
741496 171

TTG ...

LEP ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1207750 117

AGG ...

RSQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1208565 126

AAG ...

KFI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1207336 90

AAG ...

KTV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
966837 117

ATT ...

ILV ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
743474 195

CTG ...

LGH ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1645501 159

CTG ...

LKT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
738048 108

CTG ...

LPL ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
103647 33

TTG ...

LDV ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF
729545 51

CTG ...

LWR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1208052 75

CTG ...

LWL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
1207070 39

GTG ...

VKP ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
743371 108

ATG ...

MHL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1213467 156

ATC ...

ITT ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
738695 48

ATG ...

MQL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1208875 36

AGG ...

RCR ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
732469 57

GTG ...

VMV ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1216724 186

ACG ...

TLP ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1162031 60

CTG ...

LGH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
733122 54

ATG ...

MKM ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
412585 60

ACG ...

TRK ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
120868 75

ATG ...

MKT ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1206505 54

ACG ...

TAG ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
15223 66

ATG ...

MRE ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
49177 96

TTG ...

LSC ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
971813 135

AGG ...

RIQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
730454 51

GTG ...

VEA ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
1162453 36

TTG ...

LEP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1210403 36

ACG ...

TCG ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
740280 54

ATG ...

MVF ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1210819 60

ATC ...

ISH ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1213729 63

ATA ...

IVC ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1215637 261

AAG ...

KFI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
969008 129

ATC ...

IVQ ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1210661 171

ATC ...

IKR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    sORF
    Upstream
E14
1209589 129

AAG ...

KAG ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
737110 36

ATG ...

MMG ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
970879 240

AGG ...

RQS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1208889 51

ATA ...

IHP ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1170574 75

CTG ...

LEP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
1206482 78

ATG ...

MVL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
740844 45

ATG ...

MTS ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
731948 42

TTG ...

LVK ...

Ribo-seq
TTG strong 7 sORFs_org_Mouse
    sORF
    Upstream
E14, Liver, MEF,
NSC, v6-5
743399 90

CTG ...

LLE ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
15426 63

TTG ...

LMP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
745866 54

TTG ...

LTG ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1212673 84

AGG ...

RSG ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1214557 81

ATC ...

ILQ ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
738361 150

ATG ...

MAM ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
738178 48

ATG ...

MIQ ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
15854 30

TTG ...

LGR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
v6-5
412311 222

TTG ...

LDL ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14, MEF
727734 126

ATG ...

MWG ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
746720 39

CTG ...

LTL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
740176 60

CTG ...

LLS ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
121526 63

CTG ...

LWR ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
731626 165

GTG ...

VIF ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5