Transcript 45718 | MetamORF

Transcript

ID CARD

MetamORF ID

45718

ENSMUST00000111689

Name

Ctnnd1-215

Strand

Biotype

protein_coding

Start-end positions

84600073-84650745

CDS Start-stop positions

84602892-84624302

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:12388

Aliases

AA409437,
AU019353, Catns, Ctnnd,
Ctnnd1, ENSMUSG00000034101, MGI:105100,
mKIAA0384, NCBI:12388, OFF:Ctnnd1,
P120

Chr 2

ORFs

111 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1212983	72	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1879335	201	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
970955	270	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1877481	228	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1165848	45	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
49016	30	ATG ...	MAP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Testis
50884	102	ATG ...	MPT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, R1E, Testis
740200	135	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
733122	54	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1162031	60	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
730762	156	GTG ...	VFA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
729545	51	CTG ...	LWR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
740280	54	ATG ...	MVF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
15854	30	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
747035	117	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
731193	114	CTG ...	LVG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
736710	72	ATG ...	MGM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1727617	135	GTG ...	VYF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	MEF
15223	66	ATG ...	MRE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
730424	33	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
412311	222	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
734950	45	TTG ...	LGL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
733238	117	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
15571	75	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
746720	39	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
739202	54	ATG ...	MAD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
15936	39	CTG ...	LTC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
735543	51	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
739874	42	GTG ...	VKR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
99036	57	GTG ...	VEL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
50173	69	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
736410	78	ATG ...	MNS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
123021	48	ATG ...	MMG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
737110	36	ATG ...	MMG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
746460	180	ATG ...	MHW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1170574	75	CTG ...	LEP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
743399	90	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
50716	144	ATG ...	MSR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, R1E, Testis
15233	102	TTG ...	LWK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
737315	48	ATG ...	MVI ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
51503	81	ATG ...	MAP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Testis
1208052	75	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
15426	63	TTG ...	LMP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
111567	36	ATG ...	MLT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
743857	123	ATG ...	MIQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1878992	213	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
117947	69	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
746569	39	TTG ...	LRW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
119440	45	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
727876	39	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
730517	45	TTG ...	LVK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
733147	240	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1637910	225	GTG ...	VLD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
730220	144	ATG ...	MGA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
746682	141	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
737524	135	CTG ...	LVP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
47438	114	CTG ...	LER ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E, Testis
16580	198	TTG ...	LYF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
730454	51	GTG ...	VEA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
734500	57	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
736472	168	TTG ...	LWR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
747018	168	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
727734	126	ATG ...	MWG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
738178	48	ATG ...	MIQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
412795	216	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
742773	87	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
740863	39	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
740844	45	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
15671	60	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
100904	33	CTG ...	LTL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
745866	54	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
103647	33	TTG ...	LDV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
120868	75	ATG ...	MKT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
744017	78	ATG ...	MMI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
121526	63	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
1209147	84	CTG ...	LIM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
735967	30	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
743371	108	ATG ...	MHL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
51385	84	TTG ...	LSC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Testis
118758	72	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
731111	87	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
45717	51	ATG ...	MPT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, R1E, Testis
16216	75	CTG ...	LIM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Testis
740944	42	GTG ...	VWT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
734233	66	ATG ...	MAD ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
745612	75	ATG ...	MIA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
745286	51	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
126142	96	CTG ...	LVG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
738361	150	ATG ...	MAM ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
741652	186	TTG ...	LVM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
738702	33	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1170326	63	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
16563	114	TTG ...	LWK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
740674	36	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
731948	42	TTG ...	LVK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
732469	57	GTG ...	VMV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1724412	297	CTG ...	LPC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
737274	60	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
117185	45	TTG ...	LWA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1206482	78	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1162522	48	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
45877	93	ATG ...	MSR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, R1E, Testis
731686	48	CTG ...	LPK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
743545	183	GTG ...	VMH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
731626	165	GTG ...	VIF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
49177	96	TTG ...	LSC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1645501	159	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
115273	36	CTG ...	LWS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1212658	282	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
1879002	189	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
738048	108	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E

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