Transcript 94767 | MetamORF

Transcript

ID CARD

MetamORF ID

94767

ENSMUST00000111684

Name

Ctnnd1-210

Strand

Biotype

protein_coding

Start-end positions

84600100-84650745

CDS Start-stop positions

84602892-84624302

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:12388

Aliases

AA409437,
AU019353, Catns, Ctnnd,
Ctnnd1, ENSMUSG00000034101, MGI:105100,
mKIAA0384, NCBI:12388, OFF:Ctnnd1,
P120

Chr 2

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
967042	105	AGG ...	RQS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
970274	258	AGG ...	RQS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
966301	36	AAG ...	KLW ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
734950	45	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
103647	33	TTG ...	LDV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
969008	129	ATC ...	IVQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
50716	144	ATG ...	MSR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14
117947	69	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
49016	30	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
740863	39	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
971303	120	ATA ...	IQW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
970851	84	ATT ...	IHM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
969543	63	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
738702	33	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
100904	33	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
45717	51	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
740200	135	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
746460	180	ATG ...	MHW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
966837	117	ATT ...	ILV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
731626	165	GTG ...	VIF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
50884	102	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
747035	117	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
118758	72	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
971813	135	AGG ...	RIQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
745612	75	ATG ...	MIA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
970955	270	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
412442	141	AGG ...	RER ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
729545	51	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
126142	96	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
15223	66	ATG ...	MRE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
45877	93	ATG ...	MSR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain
115273	36	CTG ...	LWS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
412100	96	ACG ...	TEG ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
747018	168	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
743371	108	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
970530	99	ATT ...	ILV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
740280	54	ATG ...	MVF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
733238	117	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
736710	72	ATG ...	MGM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
731948	42	TTG ...	LVK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
120868	75	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
738178	48	ATG ...	MIQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
965686	87	ATT ...	IHM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
106751	45	TTG ...	LCL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
970412	63	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
111567	36	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
117185	45	TTG ...	LWA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
965968	75	AGG ...	RKD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
119440	45	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
47438	114	CTG ...	LER ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
51503	81	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
966561	117	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
99036	57	GTG ...	VEL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
412585	60	ACG ...	TRK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
16563	114	TTG ...	LWK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
966067	87	ATC ...	IPK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
123021	48	ATG ...	MMG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
969947	30	AAG ...	KST ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	BMDC
969142	111	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
969413	174	ACG ...	TIK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
121526	63	CTG ...	LWR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
735967	30	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC

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