Transcript 16214 | MetamORF

Transcript

ID CARD

MetamORF ID

16214

ENSMUST00000145312

Name

Ctnnd1-228

Strand

Biotype

processed_transcript

Start-end positions

84600783-84650540

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:12388

Aliases

AA409437,
AU019353, Catns, Ctnnd,
Ctnnd1, ENSMUSG00000034101, MGI:105100,
mKIAA0384, NCBI:12388, OFF:Ctnnd1,
P120

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1168697	33	TTG ...	LKG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
16213	69	CTG ...	LDR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Skin_tumor, Testis, v6-5
1216915	177	AAG ...	KKP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
46985	117	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1215678	276	ATC ...	INE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
738862	102	GTG ...	VVH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
124428	60	TTG ...	LRT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
1217221	210	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
51426	51	CTG ...	LGD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Testis, v6-5
50577	267	GTG ...	VNL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
970601	84	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1420222	102	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
46405	105	TTG ...	LNT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
16537	99	CTG ...	LNE ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Skin_tumor, Testis, v6-5
1217520	225	ACG ...	TQG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1215387	237	AAG ...	KLR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1215023	216	ATT ...	IEK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
970879	240	AGG ...	RQS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
49877	297	GTG ...	VVS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
729371	75	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
51422	285	TTG ...	LNT ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5

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