Metam
ORF

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Gene

Gene

ID CARD

ID

NCBI:11947

Aliases

Atp5b
Atp5f1b, ENSMUSG00000025393, MGI:107801
NCBI:11947, OFF:Atp5b

Chromosome

10

Transcripts

161 ORFs
9 known transcripts
286 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

7695 ENSMUST00000026459 Atp5b-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

6965 54

TTG ...

LAM ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
518604 87

ATG ...

MSP ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1282507 87

ATG ...

MSL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
7830 219

ATG ...

MLP ...

Ribo-seq
ATG

20 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5
928890 48

AGG ...

RQG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
3143 102

CTG ...

LWI ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
436972 78

CTG ...

LPP ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
R1E, Spleen_B_cell
288481 105

ATG ...

MTS ...

Ribo-seq
ATG

10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC
287457 249

CTG ...

LPL ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
978017 144

AGG ...

RLP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1690325 90

CTG ...

LKA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
418640 108

ATT ...

IMT ...

Ribo-seq
ATT

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
C2C12, E14
884454 33

CTG ...

LLV ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
911198 51

AGG ...

RKG ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
927600 69

ATA ...

IWT ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
513065 96

CTG ...

LCP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
872189 99

CTG ...

LRP ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
R1E
929126 102

ACG ...

TSP ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
288577 168

CTG ...

LWI ...

Ribo-seq
CTG

17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
290229 231

TTG ...

LPI ...

Ribo-seq
TTG

19 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
4409 189

CTG ...

LTL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
418308 66

AAG ...

KYW ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
289285 243

CTG ...

LQP ...

Ribo-seq
CTG

17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
929178 225

ATT ...

IWM ...

Ribo-seq
ATT

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Liver
7694 210

CTG ...

LCC ...

Ribo-seq
CTG

17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, v6-5
900469 66

ATC ...

IPT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
90486 255

CTG ...

LTL ...

Ribo-seq
CTG

19 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
906559 96

AGG ...

RCW ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
288892 120

TTG ...

LAM ...

Ribo-seq
TTG

15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC
926982 36

ACG ...

TSP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
289096 75

TTG ...

LTT ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, Neutrophil,
NSC, Spleen_B_cell
1687482 105

TTG ...

LLW ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
7634 153

ATG ...

MLP ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
929012 132

ATC ...

IPT ...

Ribo-seq
ATC

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
182190 162

TTG ...

LWG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
929655 162

ATC ...

IHW ...

Ribo-seq
ATC

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1684705 30

TTG ...

LVL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
3371 144

CTG ...

LCC ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
7780 189

CTG ...

LSW ...

Ribo-seq
CTG

18 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
v6-5
56314 39

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
5549 165

TTG ...

LPI ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
7699 192

TTG ...

LLS ...

Ribo-seq
TTG

17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, v6-5
881150 114

ATG ...

MRR ...

Ribo-seq
ATG

moderate

6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
R1E
1282197 174

ATC ...

IQL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1691089 96

ATG ...

MAL ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
445227 123

TTG ...

LLN ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, NSC,
Spleen_B_cell
1264724 81

ATT ...

ITT ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
6301 177

CTG ...

LQP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
927519 159

ATT ...

IWM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
56812 57

TTG ...

LLA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
7583 123

CTG ...

LSW ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
915895 96

ATC ...

IHW ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
174443 33

TTG ...

LEV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1236681 105

AGG ...

RRL ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
4036 183

CTG ...

LPL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
6133 48

ATG ...

MSI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
923682 108

ATC ...

IQL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
3386 126

TTG ...

LLS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
929137 75

AGG ...

RKG ...

Ribo-seq
AGG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
444972 120

CTG ...

LNT ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, NSC, Spleen_B_cell
289823 123

TTG ...

LLA ...

Ribo-seq
TTG

15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
290719 114

ATG ...

MSI ...

Ribo-seq
ATG

15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC
59663 ENSMUST00000126751 Atp5b-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

89261 270

TTG ...

LGM ...

Ribo-seq
TTG

11 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
975182 282

ATC ...

IIA ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
275913 42

CTG ...

LRS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14
1233689 36

AAG ...

KAD ...

Ribo-seq
AAG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
66302 159

GTG ...

VSR ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, R1E
976472 210

ATC ...

IIA ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
444982 237

TTG ...

LTV ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
445201 231

GTG ...

VSR ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
869469 45

TTG ...

LLR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
81317 165

TTG ...

LTV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, R1E
59662 69

TTG ...

LKE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Testis
977446 54

ATT ...

IEE ...

Ribo-seq
ATT

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF
67782 78

CTG ...

LVP ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Testis
87606 147

GTG ...

VPL ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
Testis
1242795 33

AGG ...

RRP ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
82596 45

TTG ...

LPS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1252974 57

ATT ...

IKG ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
513065 96

CTG ...

LCP ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, R1E
71434 198

TTG ...

LGM ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Testis
61841 129

TTG ...

LSQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14
74548 75

GTG ...

VPL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, Testis
65340 84

TTG ...

LLA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
511201 57

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
7135 63

GTG ...

VGP ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14
290679 201

TTG ...

LSQ ...

Ribo-seq
TTG

11 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell
1282723 213

ATA ...

IQR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
4526 42

GTG ...

VAK ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14
90244 150

CTG ...

LVP ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
Testis
579558 ENSMUST00000123803 Atp5b-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

511201 57

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
82596 45

TTG ...

LPS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
974497 54

AGG ...

RTS ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
1692645 78

CTG ...

LSF ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
71434 198

TTG ...

LGM ...

Ribo-seq
TTG

strong

8 sORFs_org_Mouse
    Intronic
    sORF
3T3, E14, MEF,
Neutrophil, NSC, R1E,
v6-5
81317 165

TTG ...

LTV ...

Ribo-seq
TTG

moderate

7 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver, MEF,
Neutrophil, NSC, v6-5
66302 159

GTG ...

VSR ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
61841 129

TTG ...

LSQ ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
56314 39

ATG ...

MTS ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF
65340 84

TTG ...

LLA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, R1E
275913 42

CTG ...

LRS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
55903 ENSMUST00000144918 Atp5b-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

5549 165

TTG ...

LPI ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis
66302 159

GTG ...

VSR ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
3386 126

TTG ...

LLS ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
1257600 141

ATA ...

IQR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
E14
6572 252

CTG ...

LTD ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis
511201 57

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell
78829 150

CTG ...

LDS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Testis
7576 267

GTG ...

VPA ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
56314 39

ATG ...

MTS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, R1E, Spleen_B_cell,
Testis
418372 42

ATT ...

IMT ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
974497 54

AGG ...

RTS ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1271088 39

ATC ...

ISP ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Intronic
    sORF
E14
900469 66

ATC ...

IPT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
E14
7634 153

ATG ...

MLP ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, Testis
3371 144

CTG ...

LCC ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis
6133 48

ATG ...

MSI ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, Testis
4409 189

CTG ...

LTL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, Testis
55902 159

GTG ...

VDP ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, Testis
923682 108

ATC ...

IQL ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
E14
1254244 171

ATC ...

IYP ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
E14
926982 36

ACG ...

TSP ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
915895 96

ATC ...

IHW ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
E14
6628 198

TTG ...

LSR ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
82596 45

TTG ...

LPS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
1269983 63

ATT ...

IDC ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
6301 177

CTG ...

LQP ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis
1258235 186

ATT ...

IAE ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
3143 102

CTG ...

LWI ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
6965 54

TTG ...

LAM ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
2549 177

TTG ...

LGI ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
R1E, Spleen_B_cell, Testis
65340 84

TTG ...

LLA ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Spleen_B_cell, Testis
4036 183

CTG ...

LPL ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis
1242178 45

AAG ...

KKD ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
7583 123

CTG ...

LSW ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
R1E, Spleen_B_cell, Testis
3940 201

GTG ...

VLS ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Intronic
    sORF
B_cell, BMDC, Brain,
MEF, R1E, Spleen_B_cell,
Testis
56812 57

TTG ...

LLA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF, R1E,
Spleen_B_cell, Testis
6640 216

TTG ...

LDA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF, R1E,
Spleen_B_cell, Testis
182191 ENSMUST00000127439 Atp5b-207 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

978187 108

GTG ...

VDV ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
418431 120

ATC ...

IGA ...

Ribo-seq
ATC

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
C2C12, MEF
283235 114

TTG ...

LSA ...

Ribo-seq
TTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
182190 162

TTG ...

LWG ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell
976873 75

ATC ...

ILN ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
881150 114

ATG ...

MRR ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
E14, NSC
977549 129

GTG ...

VAV ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
184978 153

GTG ...

VWP ...

Ribo-seq
GTG

11 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell
872189 99

CTG ...

LRP ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
436972 78

CTG ...

LPP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
NSC
76104 ENSMUST00000124993 Atp5b-203 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3386 126

TTG ...

LLS ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
7699 192

TTG ...

LLS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
2549 177

TTG ...

LGI ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
288481 105

ATG ...

MTS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
4409 189

CTG ...

LTL ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
911198 51

AGG ...

RKG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
6572 252

CTG ...

LTD ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
7830 219

ATG ...

MLP ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
7634 153

ATG ...

MLP ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
6301 177

CTG ...

LQP ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
4195 153

GTG ...

VSA ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, Testis,
v6-5
287457 249

CTG ...

LPL ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
7105 141

TTG ...

LGR ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, Testis,
v6-5
7576 267

GTG ...

VPA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
978017 144

AGG ...

RLP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
78829 150

CTG ...

LDS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
6133 48

ATG ...

MSI ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
1018133 30

TTG ...

LTL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
3143 102

CTG ...

LWI ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
7583 123

CTG ...

LSW ...

Ribo-seq
CTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
927519 159

ATT ...

IWM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
418372 42

ATT ...

IMT ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
65340 84

TTG ...

LLA ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
978078 54

AAG ...

KGS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
288892 120

TTG ...

LAM ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
6640 216

TTG ...

LDA ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
289823 123

TTG ...

LLA ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
3940 201

GTG ...

VLS ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
3371 144

CTG ...

LCC ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
290719 114

ATG ...

MSI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
6628 198

TTG ...

LSR ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
289285 243

CTG ...

LQP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
55902 159

GTG ...

VDP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
7694 210

CTG ...

LCC ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
418409 273

ATC ...

IYV ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
C2C12
5549 165

TTG ...

LPI ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
56812 57

TTG ...

LLA ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
513065 96

CTG ...

LCP ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, NSC, v6-5
6965 54

TTG ...

LAM ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
4036 183

CTG ...

LPL ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
56314 39

ATG ...

MTS ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, v6-5
511201 57

TTG ...

LLL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, MEF
4527 ENSMUST00000125992 Atp5b-204 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

7856 168

TTG ...

LKE ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF, Neutrophil,
Skin_tumor
59662 69

TTG ...

LKE ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
Neutrophil, NSC
4526 42

GTG ...

VAK ...

Ribo-seq
GTG

strong

9 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5
61841 129

TTG ...

LSQ ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
67782 78

CTG ...

LVP ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E
7854 177

CTG ...

LVP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF, Neutrophil,
Skin_tumor
869469 45

TTG ...

LLR ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, R1E
7135 63

GTG ...

VGP ...

Ribo-seq
GTG

strong

9 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5
74548 75

GTG ...

VPL ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E
445249 228

TTG ...

LSQ ...

Ribo-seq
TTG

11 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell
7670 174

GTG ...

VPL ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Liver, MEF, Neutrophil,
Skin_tumor
275913 42

CTG ...

LRS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, R1E
171314 ENSMUST00000139295 Atp5b-208 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

977976 36

ATT ...

IDE ...

Ribo-seq
ATT

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
977894 177

ATC ...

INN ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
516821 72

ATG ...

MVV ...

Ribo-seq
ATG

moderate

13 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
205642 36

TTG ...

LLL ...

Ribo-seq
TTG

moderate

14 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
1018766 66

CTG ...

LTL ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
905119 60

ATC ...

IWC ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
284355 48

GTG ...

VLV ...

Ribo-seq
GTG

weak

13 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell, v6-5
914293 75

ATC ...

ICW ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
518604 87

ATG ...

MSP ...

Ribo-seq
ATG

moderate

13 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
901919 54

ATG ...

MRE ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, NSC
926231 81

TTG ...

LWI ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF,
NSC
906559 96

AGG ...

RCW ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1026652 126

CTG ...

LVT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
1029726 72

CTG ...

LVL ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
199642 51

CTG ...

LNL ...

Ribo-seq
CTG

weak

11 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Liver,
MEF, NSC, v6-5
241909 45

TTG ...

LVR ...

Ribo-seq
TTG

strong

8 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell
171313 60

CTG ...

LYL ...

Ribo-seq
CTG

moderate

13 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
174443 33

TTG ...

LEV ...

Ribo-seq
TTG

moderate

14 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
203103 51

CTG ...

LVL ...

Ribo-seq
CTG

moderate

11 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
1509021 57

TTG ...

LMR ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
NSC
269773 192

CTG ...

LIM ...

Ribo-seq
CTG

moderate

12 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
509158 42

GTG ...

VRG ...

Ribo-seq
GTG

weak

6 sORFs_org_Mouse
    Intronic
    sORF
BMDC, MEF, Neutrophil,
NSC, Spleen_B_cell
900177 114

ATA ...

IKV ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
917367 201

AAG ...

KTV ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1031901 105

GTG ...

VDL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
509249 69

GTG ...

VVT ...

Ribo-seq
GTG

strong

12 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
909654 189

ATC ...

IME ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
214854 54

TTG ...

LLV ...

Ribo-seq
TTG

weak

12 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
977185 99

CTG ...

LLA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
909387 123

GTG ...

VTG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, MEF
2550 ENSMUST00000126040 Atp5b-205 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

7135 63

GTG ...

VGP ...

Ribo-seq
GTG

strong

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell, Testis
7576 267

GTG ...

VPA ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
6628 198

TTG ...

LSR ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
55902 159

GTG ...

VDP ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
5930 102

CTG ...

LTC ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
59662 69

TTG ...

LKE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
65340 84

TTG ...

LLA ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF
80020 90

TTG ...

LLN ...

Ribo-seq
TTG

14 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
927519 159

ATT ...

IWM ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
883111 126

TTG ...

LTV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
512645 57

ATG ...

MSC ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, MEF,
Neutrophil, NSC, Spleen_B_cell
3371 144

CTG ...

LCC ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
81317 165

TTG ...

LTV ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell, Testis
1438889 33

CTG ...

LPY ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
6640 216

TTG ...

LDA ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
875502 135

CTG ...

LTG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
3143 102

CTG ...

LWI ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
56812 57

TTG ...

LLA ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF
78829 150

CTG ...

LDS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
67782 78

CTG ...

LVP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver
436610 42

TTG ...

LTT ...

Ribo-seq
TTG

13 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
6133 48

ATG ...

MSI ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
6301 177

CTG ...

LQP ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
7634 153

ATG ...

MLP ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
513065 96

CTG ...

LCP ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, Spleen_B_cell
4526 42

GTG ...

VAK ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell
4036 183

CTG ...

LPL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
6572 252

CTG ...

LTD ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
911198 51

AGG ...

RKG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
71434 198

TTG ...

LGM ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell
66302 159

GTG ...

VSR ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell, Testis
1561307 54

CTG ...

LIS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
900469 66

ATC ...

IPT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
1691354 114

CTG ...

LLS ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
5549 165

TTG ...

LPI ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
3940 201

GTG ...

VLS ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
974420 72

AGG ...

RIT ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
3386 126

TTG ...

LLS ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
6965 54

TTG ...

LAM ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
2549 177

TTG ...

LGI ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
511201 57

TTG ...

LLL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
7583 123

CTG ...

LSW ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
1018133 30

TTG ...

LTL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
74548 75

GTG ...

VPL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
56314 39

ATG ...

MTS ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF
6086 186

TTG ...

LVY ...

Ribo-seq
TTG

17 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, v6-5
7105 141

TTG ...

LGR ...

Ribo-seq
TTG

10 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Liver,
MEF, Skin_tumor, Spleen_B_cell
7647 111

CTG ...

LSF ...

Ribo-seq
CTG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, Skin_tumor
61841 129

TTG ...

LSQ ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Spleen_B_cell, Testis
82596 45

TTG ...

LPS ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF
275913 42

CTG ...

LRS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
4409 189

CTG ...

LTL ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Intronic
    sORF
Brain, Liver, MEF,
Skin_tumor
245518 87

CTG ...

LNT ...

Ribo-seq
CTG

15 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, Brain,
C2C12, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
4195 153

GTG ...

VSA ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Liver,
MEF, Skin_tumor, Spleen_B_cell
3289676 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

881150 114

ATG ...

MRR ...

Predicted
ATG

1 Samandi2017
    sORF
7830 219

ATG ...

MLP ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

161 ORFs
9 known transcripts
286 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

6965 54

TTG...

LAM...

TTG InCDS
Overlapping
sORF
Intronic
ncRNA
B_cell, BMDC, Brain,
Liver, MEF, Skin_tumor,
R1E, Spleen_B_cell, Testis,
3T3, E14, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
89261 270

TTG...

LGM...

TTG ncRNA
sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
11 sORFs_org_Mouse
511201 57

TTG...

LLL...

TTG Intronic
sORF
ncRNA
MEF, R1E, Spleen_B_cell,
BMDC, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
2 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
5549 165

TTG...

LPI...

TTG Intronic
sORF
InCDS
Overlapping
ncRNA
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis, Liver, Skin_tumor,
B_cell, 3T3, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
978187 108

GTG...

VDV...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
3386 126

TTG...

LLS...

TTG ncRNA
sORF
Intronic
InCDS
Overlapping
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, Brain, R1E,
Spleen_B_cell, Testis, Liver,
Skin_tumor, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
518604 87

ATG...

MSP...

ATG InCDS
Overlapping
sORF
Intronic
Glioma, Liver, MEF,
MESC, 3T3, BMDC,
Brain, E14, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 1 Johnstone2016
171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 13 sORFs_org_Mouse
1282507 87

ATG...

MSL...

ATG Alternative
InCDS
Overlapping
sORF
E14, Glioma, Liver,
MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
Johnstone2016
66302 159

GTG...

VSR...

GTG Intronic
sORF
ncRNA
E14, 3T3, BMDC,
R1E, MEF, Neutrophil,
NSC, v6-5, Brain,
Liver, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
7856 168

TTG...

LKE...

TTG ncRNA
sORF
Liver, MEF, Neutrophil,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
4 sORFs_org_Mouse
975182 282

ATC...

IIA...

ATC ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
275913 42

CTG...

LRS...

CTG ncRNA
sORF
Intronic
BMDC, E14, Liver,
Brain, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
418431 120

ATC...

IGA...

ATC ncRNA
sORF
C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
82596 45

TTG...

LPS...

TTG Intronic
sORF
ncRNA
MEF, R1E, BMDC,
Spleen_B_cell, Testis, Brain,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
1257600 141

ATA...

IQR...

ATA Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
6572 252

CTG...

LTD...

CTG Intronic
sORF
ncRNA
BMDC, Brain, E14,
MEF, R1E, Spleen_B_cell,
Testis, 3T3, Neutrophil,
NSC, v6-5, Liver,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
7699 192

TTG...

LLS...

TTG ncRNA
sORF
InCDS
Overlapping
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
17 sORFs_org_Mouse
7830 219

ATG...

MLP...

ATG InCDS
Overlapping
sORF
ncRNA
B_cell, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
20 sORFs_org_Mouse
Johnstone2016
3289676 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
977976 36

ATT...

IDE...

ATT Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
928890 48

AGG...

RQG...

AGG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
2549 177

TTG...

LGI...

TTG ncRNA
sORF
Intronic
MEF, Neutrophil, Brain,
Liver, Skin_tumor, BMDC,
E14, R1E, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
3 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
3143 102

CTG...

LWI...

CTG InCDS
Overlapping
sORF
Intronic
ncRNA
B_cell, Brain, Liver,
MEF, Skin_tumor, 3T3,
E14, Neutrophil, NSC,
v6-5, BMDC, R1E,
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
7135 63

GTG...

VGP...

GTG Intronic
sORF
ncRNA
Brain, Liver, MEF,
Spleen_B_cell, Testis, 3T3,
BMDC, E14, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
strong 6 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
strong 9 sORFs_org_Mouse
288481 105

ATG...

MTS...

ATG ncRNA
sORF
InCDS
Overlapping
R1E, 3T3, B_cell,
BMDC, Brain, Liver,
MEF, Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
10 sORFs_org_Mouse
7576 267

GTG...

VPA...

GTG Intronic
sORF
ncRNA
Brain, Liver, MEF,
Skin_tumor, BMDC, R1E,
Spleen_B_cell, Testis, 3T3,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
1233689 36

AAG...

KAD...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
436972 78

CTG...

LPP...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
Brain, E14, Liver,
R1E, Spleen_B_cell, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
6628 198

TTG...

LSR...

TTG Intronic
sORF
ncRNA
Brain, Liver, MEF,
Skin_tumor, BMDC, R1E,
Spleen_B_cell, Testis, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
6 sORFs_org_Mouse
4409 189

CTG...

LTL...

CTG ncRNA
sORF
InCDS
Overlapping
Intronic
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
B_cell, BMDC, R1E,
Spleen_B_cell, Testis, Brain,
Liver, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
7 sORFs_org_Mouse
78829 150

CTG...

LDS...

CTG Intronic
sORF
ncRNA
BMDC, E14, MEF,
R1E, Testis, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
5 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
287457 249

CTG...

LPL...

CTG InCDS
Overlapping
sORF
ncRNA
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
15 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
976472 210

ATC...

IIA...

ATC ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
444982 237

TTG...

LTV...

TTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
12 sORFs_org_Mouse
55902 159

GTG...

VDP...

GTG Intronic
sORF
ncRNA
Brain, MEF, BMDC,
E14, R1E, Spleen_B_cell,
Testis, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
977894 177

ATC...

INN...

ATC Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
978017 144

AGG...

RLP...

AGG InCDS
Overlapping
sORF
ncRNA
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
445201 231

GTG...

VSR...

GTG ncRNA
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
13 sORFs_org_Mouse
5930 102

CTG...

LTC...

CTG Intronic
sORF
MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
59662 69

TTG...

LKE...

TTG Intronic
sORF
ncRNA
Brain, E14, MEF,
Neutrophil, NSC, BMDC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
5 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
65340 84

TTG...

LLA...

TTG Intronic
sORF
ncRNA
Brain, Liver, MEF,
3T3, E14, Neutrophil,
NSC, v6-5, BMDC,
R1E, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
6 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
2 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
2 sORFs_org_Mouse
911198 51

AGG...

RKG...

AGG ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic
MEF, BMDC, E14,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1690325 90

CTG...

LKA...

CTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
56314 39

ATG...

MTS...

ATG Intronic
sORF
InCDS
Overlapping
ncRNA
Brain, R1E, Spleen_B_cell,
Testis, BMDC, MEF,
B_cell, Liver, 3T3,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
4 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
2 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
418372 42

ATT...

IMT...

ATT Intronic
sORF
ncRNA
E14, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
418640 108

ATT...

IMT...

ATT InCDS
Overlapping
sORF
C2C12, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
884454 33

CTG...

LLV...

CTG Alternative
InCDS
Overlapping
sORF
Liver, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
80020 90

TTG...

LLN...

TTG Intronic
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
14 sORFs_org_Mouse
869469 45

TTG...

LLR...

TTG ncRNA
sORF
BMDC, Brain, Liver,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
881150 114

ATG...

MRR...

ATG sORF
ncRNA
Alternative
InCDS
Overlapping
E14, NSC,
Brain, Glioma, Liver,
MEF, MESC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3289676 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
Johnstone2016
927519 159

ATT...

IWM...

ATT Intronic
sORF
ncRNA
InCDS
Overlapping
Liver, MEF, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
927600 69

ATA...

IWT...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
81317 165

TTG...

LTV...

TTG ncRNA
sORF
Intronic
3T3, BMDC, R1E,
Brain, Liver, MEF,
Spleen_B_cell, Testis, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
moderate 7 sORFs_org_Mouse
974497 54

AGG...

RTS...

AGG Intronic
sORF
E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
516821 72

ATG...

MVV...

ATG Intronic
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 13 sORFs_org_Mouse
513065 96

CTG...

LCP...

CTG InCDS
Overlapping
sORF
Intronic
ncRNA
B_cell, Brain, Liver,
Spleen_B_cell, BMDC, R1E,
3T3, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
weak 3 sORFs_org_Mouse
4526 42

GTG...

VAK...

GTG ncRNA
sORF
Intronic
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, v6-5,
Spleen_B_cell, 3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
strong 9 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
872189 99

CTG...

LRP...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
Brain, E14, Liver,
R1E, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
7634 153

ATG...

MLP...

ATG ncRNA
sORF
Intronic
InCDS
Overlapping
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, R1E, Spleen_B_cell,
Testis, Brain, Liver,
Skin_tumor, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
7 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
883111 126

TTG...

LTV...

TTG Intronic
sORF
Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
283235 114

TTG...

LSA...

TTG ncRNA
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
13 sORFs_org_Mouse
512645 57

ATG...

MSC...

ATG Intronic
sORF
3T3, BMDC, MEF,
Neutrophil, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
6301 177

CTG...

LQP...

CTG ncRNA
sORF
Intronic
InCDS
Overlapping
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver, Skin_tumor,
BMDC, R1E, Spleen_B_cell,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
7 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
3371 144

CTG...

LCC...

CTG Intronic
sORF
InCDS
Overlapping
ncRNA
Brain, Liver, MEF,
Skin_tumor, BMDC, E14,
R1E, Spleen_B_cell, Testis,
B_cell, 3T3, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
977446 54

ATT...

IEE...

ATT ncRNA
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
205642 36

TTG...

LLL...

TTG Intronic
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 14 sORFs_org_Mouse
4195 153

GTG...

VSA...

GTG ncRNA
sORF
Intronic
3T3, E14, MEF,
Neutrophil, NSC, Testis,
v6-5, BMDC, Brain,
Liver, Skin_tumor, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
929126 102

ACG...

TSP...

ACG InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1018766 66

CTG...

LTL...

CTG Intronic
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
1692645 78

CTG...

LSF...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
1 sORFs_org_Mouse
1438889 33

CTG...

LPY...

CTG Intronic
sORF
BMDC, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
288577 168

CTG...

LWI...

CTG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
17 sORFs_org_Mouse
290229 231

TTG...

LPI...

TTG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
19 sORFs_org_Mouse
7105 141

TTG...

LGR...

TTG ncRNA
sORF
Intronic
3T3, E14, MEF,
Neutrophil, NSC, Testis,
v6-5, BMDC, Brain,
Liver, Skin_tumor, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
10 sORFs_org_Mouse
182190 162

TTG...

LWG...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
9 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
418308 66

AAG...

KYW...

AAG Alternative
InCDS
Overlapping
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
6640 216

TTG...

LDA...

TTG Intronic
sORF
ncRNA
Brain, Liver, MEF,
Skin_tumor, E14, Neutrophil,
NSC, v6-5, BMDC,
R1E, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
7 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
5 sORFs_org_Mouse
905119 60

ATC...

IWC...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
289285 243

CTG...

LQP...

CTG InCDS
Overlapping
sORF
ncRNA
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, v6-5, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
17 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1271088 39

ATC...

ISP...

ATC Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
875502 135

CTG...

LTG...

CTG Intronic
sORF
Brain, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
2 sORFs_org_Mouse
284355 48

GTG...

VLV...

GTG Intronic
sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 13 sORFs_org_Mouse
929178 225

ATT...

IWM...

ATT InCDS
Overlapping
sORF
BMDC, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
7694 210

CTG...

LCC...

CTG InCDS
Overlapping
sORF
ncRNA
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
17 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
61841 129

TTG...

LSQ...

TTG ncRNA
sORF
Intronic
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5,
BMDC, Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
9 sORFs_org_Mouse
579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
5 sORFs_org_Mouse
914293 75

ATC...

ICW...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
900469 66

ATC...

IPT...

ATC InCDS
Overlapping
sORF
Intronic
BMDC, E14, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
6133 48

ATG...

MSI...

ATG ncRNA
sORF
Intronic
InCDS
Overlapping
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver, Skin_tumor,
BMDC, R1E, Spleen_B_cell,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1018133 30

TTG...

LTL...

TTG ncRNA
sORF
Intronic
MEF, NSC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
90486 255

CTG...

LTL...

CTG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
19 sORFs_org_Mouse
71434 198

TTG...

LGM...

TTG Intronic
sORF
ncRNA
3T3, E14, MEF,
Neutrophil, NSC, R1E,
v6-5, Brain, Liver,
Spleen_B_cell, BMDC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

579558 ENSMUST00000123803 Atp5b-202 retained_intron Ribo-seq
strong 8 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
8 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
56812 57

TTG...

LLA...

TTG Intronic
sORF
InCDS
Overlapping
ncRNA
Brain, Liver, MEF,
B_cell, 3T3, E14,
Neutrophil, NSC, v6-5,
BMDC, R1E, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
5 sORFs_org_Mouse
906559 96

AGG...

RCW...

AGG Alternative
InCDS
Overlapping
sORF
Intronic
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
901919 54

ATG...

MRE...

ATG Intronic
sORF
BMDC, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
67782 78

CTG...

LVP...

CTG ncRNA
sORF
Intronic
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, BMDC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
7 sORFs_org_Mouse
59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
3 sORFs_org_Mouse
87606 147

GTG...

VPL...

GTG ncRNA
sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
7 sORFs_org_Mouse
7583 123

CTG...

LSW...

CTG ncRNA
sORF
Intronic
InCDS
Overlapping
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, Liver, Skin_tumor,
B_cell, BMDC, R1E,
Spleen_B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
8 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
1242795 33

AGG...

RRP...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
926231 81

TTG...

LWI...

TTG Intronic
sORF
BMDC, Brain, MEF,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
6 sORFs_org_Mouse
436610 42

TTG...

LTT...

TTG Intronic
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
13 sORFs_org_Mouse
976873 75

ATC...

ILN...

ATC ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
7854 177

CTG...

LVP...

CTG ncRNA
sORF
Liver, MEF, Neutrophil,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1026652 126

CTG...

LVT...

CTG Intronic
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
3 sORFs_org_Mouse
288892 120

TTG...

LAM...

TTG InCDS
Overlapping
sORF
ncRNA
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
15 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1252974 57

ATT...

IKG...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
978078 54

AAG...

KGS...

AAG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1029726 72

CTG...

LVL...

CTG Intronic
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
926982 36

ACG...

TSP...

ACG InCDS
Overlapping
sORF
Intronic
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
289096 75

TTG...

LTT...

TTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, Liver, Neutrophil,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
9 sORFs_org_Mouse
1687482 105

TTG...

LLW...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
199642 51

CTG...

LNL...

CTG Intronic
sORF
Brain, E14, Liver,
MEF, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 11 sORFs_org_Mouse
929012 132

ATC...

IPT...

ATC InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
4036 183

CTG...

LPL...

CTG Intronic
sORF
InCDS
Overlapping
ncRNA
Brain, Liver, MEF,
Skin_tumor, BMDC, E14,
R1E, Spleen_B_cell, Testis,
B_cell, 3T3, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
7 sORFs_org_Mouse
923682 108

ATC...

IQL...

ATC Intronic
sORF
InCDS
Overlapping
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
289823 123

TTG...

LLA...

TTG ncRNA
sORF
InCDS
Overlapping
R1E, 3T3, B_cell,
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
15 sORFs_org_Mouse
1254244 171

ATC...

IYP...

ATC Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
241909 45

TTG...

LVR...

TTG Intronic
sORF
Brain, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
strong 8 sORFs_org_Mouse
915895 96

ATC...

IHW...

ATC Intronic
sORF
InCDS
Overlapping
E14, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
929655 162

ATC...

IHW...

ATC InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1684705 30

TTG...

LVL...

TTG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
977549 129

GTG...

VAV...

GTG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
171313 60

CTG...

LYL...

CTG Intronic
sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 13 sORFs_org_Mouse
1561307 54

CTG...

LIS...

CTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
3940 201

GTG...

VLS...

GTG ncRNA
sORF
Intronic
E14, MEF, Neutrophil,
NSC, v6-5, Brain,
Liver, Skin_tumor, B_cell,
BMDC, R1E, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
6 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
6 sORFs_org_Mouse
55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
7 sORFs_org_Mouse
1691354 114

CTG...

LLS...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
974420 72

AGG...

RIT...

AGG Intronic
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
1269983 63

ATT...

IDC...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
7780 189

CTG...

LSW...

CTG InCDS
Overlapping
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
18 sORFs_org_Mouse
74548 75

GTG...

VPL...

GTG ncRNA
sORF
Intronic
BMDC, E14, Testis,
Brain, Liver, MEF,
Neutrophil, NSC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
1 sORFs_org_Mouse
4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
7 sORFs_org_Mouse
184978 153

GTG...

VWP...

GTG ncRNA
sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

182191 ENSMUST00000127439 Atp5b-207 processed_transcript Ribo-seq
11 sORFs_org_Mouse
290719 114

ATG...

MSI...

ATG ncRNA
sORF
InCDS
Overlapping
R1E, 3T3, B_cell,
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
15 sORFs_org_Mouse
1282197 174

ATC...

IQL...

ATC InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1691089 96

ATG...

MAL...

ATG Alternative
InCDS
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
445227 123

TTG...

LLN...

TTG InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, Liver, NSC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
8 sORFs_org_Mouse
290679 201

TTG...

LSQ...

TTG ncRNA
sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
11 sORFs_org_Mouse
1264724 81

ATT...

ITT...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
174443 33

TTG...

LEV...

TTG Intronic
sORF
InCDS
Overlapping
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 14 sORFs_org_Mouse
7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1258235 186

ATT...

IAE...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
1282723 213

ATA...

IQR...

ATA ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
6086 186

TTG...

LVY...

TTG Intronic
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
17 sORFs_org_Mouse
203103 51

CTG...

LVL...

CTG Intronic
sORF
Brain, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 11 sORFs_org_Mouse
1509021 57

TTG...

LMR...

TTG Intronic
sORF
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
418409 273

ATC...

IYV...

ATC ncRNA
sORF
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

76104 ENSMUST00000124993 Atp5b-203 processed_transcript Ribo-seq
1 sORFs_org_Mouse
269773 192

CTG...

LIM...

CTG Intronic
sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 12 sORFs_org_Mouse
7647 111

CTG...

LSF...

CTG Intronic
sORF
MEF, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
509158 42

GTG...

VRG...

GTG Intronic
sORF
BMDC, MEF, Neutrophil,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 6 sORFs_org_Mouse
1242178 45

AAG...

KKD...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

55903 ENSMUST00000144918 Atp5b-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
1236681 105

AGG...

RRL...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
445249 228

TTG...

LSQ...

TTG ncRNA
sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
11 sORFs_org_Mouse
900177 114

ATA...

IKV...

ATA Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
917367 201

AAG...

KTV...

AAG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1031901 105

GTG...

VDL...

GTG Intronic
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
90244 150

CTG...

LVP...

CTG ncRNA
sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

59663 ENSMUST00000126751 Atp5b-206 processed_transcript Ribo-seq
7 sORFs_org_Mouse
509249 69

GTG...

VVT...

GTG Intronic
sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
strong 12 sORFs_org_Mouse
909654 189

ATC...

IME...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
7670 174

GTG...

VPL...

GTG ncRNA
sORF
Liver, MEF, Neutrophil,
Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

4527 ENSMUST00000125992 Atp5b-204 processed_transcript Ribo-seq
4 sORFs_org_Mouse
245518 87

CTG...

LNT...

CTG Intronic
sORF
3T3, BMDC, Brain,
C2C12, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2550 ENSMUST00000126040 Atp5b-205 retained_intron Ribo-seq
15 sORFs_org_Mouse
929137 75

AGG...

RKG...

AGG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
214854 54

TTG...

LLV...

TTG Intronic
sORF
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
weak 12 sORFs_org_Mouse
444972 120

CTG...

LNT...

CTG InCDS
Overlapping
sORF
BMDC, Brain, E14,
Liver, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

7695 ENSMUST00000026459 Atp5b-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
977185 99

CTG...

LLA...

CTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
1 sORFs_org_Mouse
909387 123

GTG...

VTG...

GTG Intronic
sORF
BMDC, Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

171314 ENSMUST00000139295 Atp5b-208 retained_intron Ribo-seq
4 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5