Transcript 59663 | MetamORF

Transcript

ID CARD

MetamORF ID

59663

ENSMUST00000126751

Name

Atp5b-206

Strand

Biotype

processed_transcript

Start-end positions

128088552-128090273

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:11947

Aliases

Atp5b,
Atp5f1b, ENSMUSG00000025393, MGI:107801,
NCBI:11947, OFF:Atp5b

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89261	270	TTG ...	LGM ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
975182	282	ATC ...	IIA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
275913	42	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1233689	36	AAG ...	KAD ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
66302	159	GTG ...	VSR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, R1E
976472	210	ATC ...	IIA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
444982	237	TTG ...	LTV ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
445201	231	GTG ...	VSR ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
869469	45	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
81317	165	TTG ...	LTV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, R1E
59662	69	TTG ...	LKE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis
977446	54	ATT ...	IEE ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
67782	78	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis
87606	147	GTG ...	VPL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, Testis
1242795	33	AGG ...	RRP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
82596	45	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1252974	57	ATT ...	IKG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
513065	96	CTG ...	LCP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
71434	198	TTG ...	LGM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis
61841	129	TTG ...	LSQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
74548	75	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Testis
65340	84	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
511201	57	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
7135	63	GTG ...	VGP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14
290679	201	TTG ...	LSQ ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
1282723	213	ATA ...	IQR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
4526	42	GTG ...	VAK ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14
90244	150	CTG ...	LVP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, Testis

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