Transcript 76104 | MetamORF

Transcript

ID CARD

MetamORF ID

76104

ENSMUST00000124993

Name

Atp5b-203

Strand

Biotype

processed_transcript

Start-end positions

128086230-128089152

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:11947

Aliases

Atp5b,
Atp5f1b, ENSMUSG00000025393, MGI:107801,
NCBI:11947, OFF:Atp5b

Chr 10

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3386	126	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
7699	192	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
2549	177	TTG ...	LGI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
288481	105	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
4409	189	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
911198	51	AGG ...	RKG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	MEF
6572	252	CTG ...	LTD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
7830	219	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
7634	153	ATG ...	MLP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
6301	177	CTG ...	LQP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
4195	153	GTG ...	VSA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, Testis, v6-5
287457	249	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
7105	141	TTG ...	LGR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, Testis, v6-5
7576	267	GTG ...	VPA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
978017	144	AGG ...	RLP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	MEF
78829	150	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
6133	48	ATG ...	MSI ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1018133	30	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
3143	102	CTG ...	LWI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
7583	123	CTG ...	LSW ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
927519	159	ATT ...	IWM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	MEF
418372	42	ATT ...	IMT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	C2C12
65340	84	TTG ...	LLA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
978078	54	AAG ...	KGS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF
288892	120	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
6640	216	TTG ...	LDA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
289823	123	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
3940	201	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
3371	144	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
290719	114	ATG ...	MSI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
6628	198	TTG ...	LSR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
289285	243	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
55902	159	GTG ...	VDP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
7694	210	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
418409	273	ATC ...	IYV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
5549	165	TTG ...	LPI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
56812	57	TTG ...	LLA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
513065	96	CTG ...	LCP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, NSC, v6-5
6965	54	TTG ...	LAM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
4036	183	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
56314	39	ATG ...	MTS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
511201	57	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF

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