Transcript 171314

Transcript

ID CARD

MetamORF ID

171314

ENSMUST00000139295

Name

Atp5b-208

Strand

Biotype

retained_intron

Start-end positions

128084433-128085949

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:11947

Aliases

Atp5b,
Atp5f1b, ENSMUSG00000025393, MGI:107801,
NCBI:11947, OFF:Atp5b

Chr 10

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
977976	36	ATT ...	IDE ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
977894	177	ATC ...	INN ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
516821	72	ATG ...	MVV ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
205642	36	TTG ...	LLL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1018766	66	CTG ...	LTL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
905119	60	ATC ...	IWC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
284355	48	GTG ...	VLV ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
914293	75	ATC ...	ICW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
518604	87	ATG ...	MSP ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
901919	54	ATG ...	MRE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, NSC
926231	81	TTG ...	LWI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, NSC
906559	96	AGG ...	RCW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1026652	126	CTG ...	LVT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1029726	72	CTG ...	LVL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
199642	51	CTG ...	LNL ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, v6-5
241909	45	TTG ...	LVR ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
171313	60	CTG ...	LYL ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
174443	33	TTG ...	LEV ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
203103	51	CTG ...	LVL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1509021	57	TTG ...	LMR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
269773	192	CTG ...	LIM ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
509158	42	GTG ...	VRG ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
900177	114	ATA ...	IKV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
917367	201	AAG ...	KTV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1031901	105	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
509249	69	GTG ...	VVT ...	Ribo-seq	GTG	strong	12	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
909654	189	ATC ...	IME ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
214854	54	TTG ...	LLV ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
977185	99	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
909387	123	GTG ...	VTG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF

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