Transcript 55903 | MetamORF

Transcript

ID CARD

MetamORF ID

55903

ENSMUST00000144918

Name

Atp5b-209

Strand

Biotype

retained_intron

Start-end positions

128087681-128089051

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

NCBI:11947

Aliases

Atp5b,
Atp5f1b, ENSMUSG00000025393, MGI:107801,
NCBI:11947, OFF:Atp5b

Chr 10

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5549	165	TTG ...	LPI ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
66302	159	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
3386	126	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
1257600	141	ATA ...	IQR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
6572	252	CTG ...	LTD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
511201	57	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
78829	150	CTG ...	LDS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Testis
7576	267	GTG ...	VPA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
56314	39	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Spleen_B_cell, Testis
418372	42	ATT ...	IMT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
974497	54	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1271088	39	ATC ...	ISP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
900469	66	ATC ...	IPT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
7634	153	ATG ...	MLP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, Testis
3371	144	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
6133	48	ATG ...	MSI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, Testis
4409	189	CTG ...	LTL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, Testis
55902	159	GTG ...	VDP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, Testis
923682	108	ATC ...	IQL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1254244	171	ATC ...	IYP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
926982	36	ACG ...	TSP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
915895	96	ATC ...	IHW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
6628	198	TTG ...	LSR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
82596	45	TTG ...	LPS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
1269983	63	ATT ...	IDC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
6301	177	CTG ...	LQP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
1258235	186	ATT ...	IAE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
3143	102	CTG ...	LWI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
6965	54	TTG ...	LAM ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
2549	177	TTG ...	LGI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Spleen_B_cell, Testis
65340	84	TTG ...	LLA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
4036	183	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
1242178	45	AAG ...	KKD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
7583	123	CTG ...	LSW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
3940	201	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
56812	57	TTG ...	LLA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Spleen_B_cell, Testis
6640	216	TTG ...	LDA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Spleen_B_cell, Testis

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