Metam
ORF

Logo

Gene

Gene

ID CARD

ID

HGNC:10430

Aliases

ENSG00000117676
HGNC:10430, HU-1, NCBI:6195
OFF:RPS6KA1, p90Rsk, RPS6KA1
RSK1

Chromosome

1

Transcripts

95 ORFs
12 known transcripts
93 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

245155 ENST00000531382 RPS6KA1-220 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

245163 198

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL
2255173 138

CTG ...

LSA ...

Ribo-seq
CTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
632789 234

GTG ...

VPW ...

Ribo-seq
GTG

2 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat, THP-1
2255180 192

GTG ...

VGS ...

Ribo-seq
GTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
245225 54

TTG ...

LAK ...

Ribo-seq
TTG

3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa, LCL
245157 204

CTG ...

LAL ...

Ribo-seq
CTG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL
1701509 174

GTG ...

VGE ...

Ribo-seq
GTG

2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, MDA-MB-231
245154 210

CTG ...

LSL ...

Ribo-seq
CTG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL
280469 90

ATG ...

MWT ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
632782 237

ATG ...

MVP ...

Ribo-seq
ATG

1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
THP-1
280525 42

GTG ...

VGE ...

Ribo-seq
GTG

2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
LCL, MDA-MB-231
1802758 120

CTG ...

LSW ...

Ribo-seq
CTG

3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa, MDA-MB-231
245178 171

ATG ...

MRA ...

Ribo-seq
ATG

3 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF, LCL, MDA-MB-231
632817 30

CTG ...

LAL ...

Ribo-seq
CTG

2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
MM1S, THP-1
632890 33

ATG ...

MSS ...

Ribo-seq
ATG

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HAP1
3399988 2235

ATG ...

MEQ ...

Ribo-seq
ATG

1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
280318 30

CTG ...

LRD ...

Ribo-seq
CTG

weak

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL
280162 42

CTG ...

LSL ...

Ribo-seq
CTG

3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL, MM1S, THP-1
1701507 69

CTG ...

LEP ...

Ribo-seq
CTG

4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
2255175 123

GTG ...

VST ...

Ribo-seq
GTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
895900 207

GCA ...

AGS ...

Ribo-seq
GCA

1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
280523 60

GTG ...

VGS ...

Ribo-seq
GTG

2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
LCL, MDA-MB-231
2255171 153

GTG ...

VWA ...

Ribo-seq
GTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
895886 48

GGA ...

GWS ...

Ribo-seq
GGA

moderate

1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
280167 36

CTG ...

LAL ...

Ribo-seq
CTG

3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL, MM1S, THP-1
2255169 156

TTG ...

LVW ...

Ribo-seq
TTG

1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
1802777 69

TTG ...

LSC ...

Ribo-seq
TTG

4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, MDA-MB-231
1701505 78

CTG ...

LRH ...

Ribo-seq
CTG

3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
895870 63

GTG ...

VAL ...

Ribo-seq
GTG

strong

1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
245227 45

CTG ...

LWS ...

Ribo-seq
CTG

3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa, LCL
280199 120

ATG ...

MRA ...

Ribo-seq
ATG

2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
LCL, MDA-MB-231
632777 252

CTG ...

LPA ...

Ribo-seq
CTG

1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
THP-1
3399971 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

2255108 99

ATG ...

MDR ...

Predicted
ATG

1 Samandi2017
    sORF
3399979 615

ATG ...

MEQ ...

Ribo-seq
ATG

1 Erhard2018

HFF
280469 90

ATG ...

MWT ...

Predicted
ATG

1 Samandi2017
    sORF
3399970 171

ATG ...

MPL ...

Ribo-seq
ATG

1 Erhard2018
    sORF
HFF
3399973 336

ATG ...

MQT ...

Ribo-seq
ATG

1 Erhard2018

HFF
3399976 159

ATG ...

MPL ...

Ribo-seq
ATG

1 Erhard2018
    sORF
HFF
3399985 498

GCT ...

AQP ...

Ribo-seq
GCT

1 Erhard2018

HFF
245178 171

ATG ...

MRA ...

Predicted
ATG

1 Samandi2017
    sORF
3399991 348

AAC ...

NTV ...

Ribo-seq
AAC

1 Erhard2018

HFF
3399982 337

ATG ...

MKV ...

Ribo-seq
ATG

1 Erhard2018

HFF
3399988 2235

ATG ...

MEQ ...

Ribo-seq
ATG

1 Erhard2018

HFF
99164 ENST00000530305 RPS6KA1-217 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

280471 51

GTG ...

VTL ...

Ribo-seq
GTG

weak

5 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, LCL,
MDA-MB-231
896102 294

ATC ...

ILY ...

Ribo-seq
ATC

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
99163 81

GTG ...

VLK ...

Ribo-seq
GTG

moderate

10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, LCL, THP-1,
U2OS
1819931 36

CTG ...

LLP ...

Ribo-seq
CTG

1 sORFs_org_Human
    Intronic
    sORF
HeLa
896124 30

CTT ...

LWF ...

Ribo-seq
CTT

weak

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
280469 90

ATG ...

MWT ...

Ribo-seq
ATG

weak

6 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, LCL,
MDA-MB-231, THP-1
280473 45

TTG ...

LVL ...

Ribo-seq
TTG

strong

5 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, LCL,
MDA-MB-231
633005 90

CTG ...

LPL ...

Ribo-seq
CTG

weak

3 sORFs_org_Human
    Intronic
    sORF
HeLa, MDA-MB-231, THP-1
633018 33

TTG ...

LPG ...

Ribo-seq
TTG

2 sORFs_org_Human
    Intronic
    sORF
HeLa, THP-1
99168 36

CTG ...

LGI ...

Ribo-seq
CTG

strong

10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1
896128 48

GAC ...

DIW ...

Ribo-seq
GAC

weak

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
1726090 30

TTG ...

LLH ...

Ribo-seq
TTG

moderate

4 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
280481 39

TTG ...

LPN ...

Ribo-seq
TTG

moderate

4 sORFs_org_Human
    Intronic
    sORF
HeLa, LCL, MDA-MB-231
99166 78

CTG ...

LKR ...

Ribo-seq
CTG

moderate

10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, LCL, THP-1,
U2OS
405924 285

GTG ...

VDE ...

Ribo-seq
GTG

2 sORFs_org_Human
    Intronic
    sORF
HCT116, Jurkat
63 ENST00000474934 RPS6KA1-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

895991 33

ATC ...

IIY ...

Ribo-seq
ATC

moderate

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
895965 81

TCC ...

SRP ...

Ribo-seq
TCC

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
99077 48

CTG ...

LHS ...

Ribo-seq
CTG

weak

12 sORFs_org_Human
    Intronic
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
THP-1, U2OS
632850 48

CTG ...

LRG ...

Ribo-seq
CTG

4 sORFs_org_Human
    Intronic
    sORF
Blood, hES, THP-1
895969 78

CTG ...

LSW ...

Ribo-seq
CTG

weak

5 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, Jurkat,
MDA-MB-231
895981 60

TGG ...

WIT ...

Ribo-seq
TGG

moderate

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
99066 111

GTG ...

VMF ...

Ribo-seq
GTG

moderate

8 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99068 90

GTG ...

VKF ...

Ribo-seq
GTG

moderate

8 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
62 57

CTG ...

LDH ...

Ribo-seq
CTG

strong

14 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1, U2OS
895975 63

GCT ...

AGS ...

Ribo-seq
GCT

moderate

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
632848 57

CTG ...

LDF ...

Ribo-seq
CTG

4 sORFs_org_Human
    Intronic
    sORF
HeLa, hES, THP-1
99074 63

CTG ...

LGL ...

Ribo-seq
CTG

strong

12 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99079 39

CTG ...

LGI ...

Ribo-seq
CTG

strong

14 sORFs_org_Human
    Intronic
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1, U2OS
99070 78

CTG ...

LAE ...

Ribo-seq
CTG

moderate

10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99072 69

CTG ...

LAL ...

Ribo-seq
CTG

strong

10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
280465 ENST00000403732 RPS6KA1-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

896064 48

GCA ...

ASL ...

Ribo-seq
GCA

1 sORFs_org_Human
    sORF
Jurkat
632996 114

GTG ...

VGS ...

Ribo-seq
GTG

3 sORFs_org_Human
    sORF
HeLa, MDA-MB-231, THP-1
632998 54

TTG ...

LSC ...

Ribo-seq
TTG

4 sORFs_org_Human
    sORF
HeLa, MDA-MB-231, THP-1
280467 30

CTG ...

LWS ...

Ribo-seq
CTG

4 sORFs_org_Human
    sORF
HeLa, LCL, THP-1
2315049 30

ATG ...

MAS ...

Ribo-seq
ATG

strong

1 sORFs_org_Human
    sORF
MDA-MB-231
1204610 39

GTG ...

VPR ...

Ribo-seq
GTG

2 sORFs_org_Human
    sORF
HAP1, MDA-MB-231
2255167 120

GTG ...

VPR ...

Ribo-seq
GTG

1 sORFs_org_Human
    sORF
MDA-MB-231
896060 57

AAG ...

KTT ...

Ribo-seq
AAG

1 sORFs_org_Human
    sORF
Jurkat
896058 120

CAC ...

HRP ...

Ribo-seq
CAC

1 sORFs_org_Human
    sORF
Jurkat
280464 39

TTG ...

LAK ...

Ribo-seq
TTG

5 sORFs_org_Human
    sORF
HeLa, LCL, MDA-MB-231,
THP-1
280243 ENST00000527264 RPS6KA1-214 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

99077 48

CTG ...

LHS ...

Ribo-seq
CTG

1 sORFs_org_Human
    Intronic
    sORF
HEK293
99079 39

CTG ...

LGI ...

Ribo-seq
CTG

1 sORFs_org_Human
    Intronic
    sORF
HEK293
405916 87

ACC ...

TKM ...

Ribo-seq
ACC

1 sORFs_org_Human
    Intronic
    sORF
HCT116
280242 48

GTG ...

VTA ...

Ribo-seq
GTG

weak

5 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, LCL,
MDA-MB-231
632845 66

CTG ...

LAD ...

Ribo-seq
CTG

2 sORFs_org_Human
    Intronic
    sORF
HEK293, THP-1
632886 ENST00000488985 RPS6KA1-208 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

632885 60

CTG ...

LMG ...

Ribo-seq
CTG

2 sORFs_org_Human
    ncRNA
    sORF
MDA-MB-231, THP-1
632890 33

ATG ...

MSS ...

Ribo-seq
ATG

4 sORFs_org_Human
    ncRNA
    sORF
Blood, hES, MDA-MB-231,
THP-1
632888 57

ATG ...

MGQ ...

Ribo-seq
ATG

2 sORFs_org_Human
    ncRNA
    sORF
MDA-MB-231, THP-1
895824 ENST00000374166 RPS6KA1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

895823 66

CGC ...

RRA ...

Ribo-seq
CGC

moderate

1 sORFs_org_Human
    sORF
    Upstream
Jurkat
2314625 60

CTG ...

LAA ...

Ribo-seq
CTG

strong

3 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
HEK293, HeLa, MDA-MB-231
1987480 45

CTG ...

LAA ...

Ribo-seq
CTG

2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa, MDA-MB-231
2255109 ENST00000529454 RPS6KA1-215 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

2255108 99

ATG ...

MDR ...

Ribo-seq
ATG

2 sORFs_org_Human
    sORF
HeLa, MDA-MB-231
1595733 48

ATG ...

MDR ...

Ribo-seq
ATG

2 sORFs_org_Human
    sORF
HEK293, MDA-MB-231
405944 ENST00000438977 RPS6KA1-206 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

405943 75

TTC ...

FRD ...

Ribo-seq
TTC

1 sORFs_org_Human
    sORF
HCT116
896162 111

TGG ...

WIP ...

Ribo-seq
TGG

moderate

1 sORFs_org_Human
    sORF
Jurkat
1819987 30

CTG ...

LGT ...

Ribo-seq
CTG

strong

1 sORFs_org_Human
    sORF
HeLa
280202 ENST00000525582 RPS6KA1-211 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

280204 69

CTG ...

LRR ...

Ribo-seq
CTG

2 sORFs_org_Human
    Intronic
    sORF
LCL, THP-1
280201 75

CTG ...

LAL ...

Ribo-seq
CTG

2 sORFs_org_Human
    Intronic
    sORF
LCL, THP-1
895951 51

TGG ...

WAP ...

Ribo-seq
TGG

moderate

1 sORFs_org_Human
    Intronic
    sORF
Jurkat
1438027 ENST00000531113 RPS6KA1-219 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1438026 51

GTG ...

VEY ...

Ribo-seq
GTG

1 sORFs_org_Human
    Intronic
    sORF
HeLa
1595734 ENST00000526792 RPS6KA1-213 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1595733 48

ATG ...

MDR ...

Ribo-seq
ATG

1 sORFs_org_Human
    sORF
    Upstream
loayza_puch_2016

ORFs

95 ORFs
12 known transcripts
93 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

245163 198

CTG...

LAL...

CTG Alternative
InCDS
Overlapping
sORF
LCL
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

245155 ENST00000531382 RPS6KA1-220 protein_coding Ribo-seq
1 sORFs_org_Human
2255108 99

ATG...

MDR...

ATG sORF
HeLa, MDA-MB-231
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3399971 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
2255109 ENST00000529454 RPS6KA1-215 protein_coding Ribo-seq
2 sORFs_org_Human
280471 51

GTG...

VTL...

GTG Intronic
sORF
Blood, HeLa, LCL,
MDA-MB-231
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

99164 ENST00000530305 RPS6KA1-217 retained_intron Ribo-seq
weak 5 sORFs_org_Human
2255173 138

CTG...

LSA...

CTG InCDS
Overlapping
sORF
MDA-MB-231
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

245155 ENST00000531382 RPS6KA1-220 protein_coding Ribo-seq
1 sORFs_org_Human
896102 294

ATC...

ILY...

ATC Intronic
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

99164 ENST00000530305 RPS6KA1-217 retained_intron Ribo-seq
1 sORFs_org_Human
632789 234

GTG...

VPW...

GTG Alternative
Overlapping
sORF
Upstream
Jurkat, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

245155 ENST00000531382 RPS6KA1-220 protein_coding Ribo-seq
2 sORFs_org_Human
2255180 192

GTG...

VGS...

GTG InCDS
Overlapping
sORF
MDA-MB-231
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

245155 ENST00000531382 RPS6KA1-220 protein_coding Ribo-seq
1 sORFs_org_Human
245225 54

TTG...

LAK...

TTG Alternative
InCDS
Overlapping
sORF
HeLa, LCL
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

245155 ENST00000531382 RPS6KA1-220 protein_coding Ribo-seq
3 sORFs_org_Human
895991 33

ATC...

IIY...

ATC Intronic
sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

63 ENST00000474934 RPS6KA1-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Human
896064 48

GCA...

ASL...

GCA sORF
Jurkat
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

280465 ENST00000403732 RPS6KA1-205 protein_coding Ribo-seq
1 sORFs_org_Human
99077 48

CTG...

LHS...

CTG Intronic
sORF
HEK293, Blood, HAP1,
HeLa, hES, MDA-MB-231,
THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

280243 ENST00000527264 RPS6KA1-214 retained_intron Ribo-seq
1 sORFs_org_Human
63 ENST00000474934 RPS6KA1-207 retained_intron Ribo-seq
weak 12 sORFs_org_Human
3399979 615

ATG...

MEQ...

ATG
HFF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3399971 UNKNOWN_TRANSCRIPT Ribo-seq
1 Erhard2018
632996 114

GTG...

VGS...

GTG sORF
HeLa, MDA-MB-231, THP-1
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

280465 ENST00000403732 RPS6KA1-205 protein_coding Ribo-seq
3 sORFs_org_Human
99079 39

CTG...

LGI...

CTG Intronic
sORF
HEK293, Blood, HAP1,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1, U2OS
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

280243 ENST00000527264 RPS6KA1-214 retained_intron Ribo-seq
1 sORFs_org_Human
63 ENST00000474934 RPS6KA1-207 retained_intron Ribo-seq
strong 14 sORFs_org_Human
405916 87

ACC...

TKM...

ACC Intronic
sORF
HCT116