Transcript 245155

Transcript

ID CARD

MetamORF ID

245155

ENST00000531382

Name

RPS6KA1-220

Strand

Biotype

protein_coding

Start-end positions

26545852-26574276

CDS Start-stop positions

26545901-26574201

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:10430

Aliases

ENSG00000117676,
HGNC:10430, HU-1, NCBI:6195,
OFF:RPS6KA1, p90Rsk, RPS6KA1,
RSK1

Chr 1

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
245163	198	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2255173	138	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
632789	234	GTG ...	VPW ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat, THP-1
2255180	192	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
245225	54	TTG ...	LAK ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
245157	204	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1701509	174	GTG ...	VGE ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
245154	210	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
280469	90	ATG ...	MWT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
632782	237	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	THP-1
280525	42	GTG ...	VGE ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
1802758	120	CTG ...	LSW ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
245178	171	ATG ...	MRA ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
632817	30	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MM1S, THP-1
632890	33	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1
3399988	2235	ATG ...	MEQ ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
280318	30	CTG ...	LRD ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
280162	42	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MM1S, THP-1
1701507	69	CTG ...	LEP ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
2255175	123	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
895900	207	GCA ...	AGS ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280523	60	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
2255171	153	GTG ...	VWA ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
895886	48	GGA ...	GWS ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
280167	36	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MM1S, THP-1
2255169	156	TTG ...	LVW ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1802777	69	TTG ...	LSC ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1701505	78	CTG ...	LRH ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
895870	63	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
245227	45	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
280199	120	ATG ...	MRA ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
632777	252	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	THP-1

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