ORF 3399988 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3399988

Chromosome

Strand

Start-stop positions

26545901-26574201

Nucleic length (bp)

2235

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MEQ ...

Spliced: Yes

Exons

Exons start-end

26545901-26546035
26546867-26546983
26547189-26547270
26551397-26551477
26551644-26551723
26553391-26553497
26554214-26554251
26554596-26554738
26555151-26555221
26555537-26555625
26556654-26556718
26556998-26557100
26558807-26558937
26560726-26560851
26561045-26561134
26561505-26561663
26571449-26571610
26571849-26571925
26572176-26572293
26573224-26573361
26574079-26574201

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
245155	ENST00000531382	protein_coding	HGNC:10430	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3399971	UNKNOWN_TRANSCRIPT		HGNC:10430	-	Ribo-seq			1	Erhard2018		HFF

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