Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

3399971

ID

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

-

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

Gene

ID

HGNC:10430

Aliases

ENSG00000117676,
HGNC:10430, HU-1, NCBI:6195,
OFF:RPS6KA1, p90Rsk, RPS6KA1,
RSK1


Chr 1

ORFs

11 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

2255108 99

ATG ...

MDR ...

Predicted
ATG 1 Samandi2017
    sORF
3399979 615

ATG ...

MEQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
280469 90

ATG ...

MWT ...

Predicted
ATG 1 Samandi2017
    sORF
3399970 171

ATG ...

MPL ...

Ribo-seq
ATG 1 Erhard2018
    sORF
HFF
3399973 336

ATG ...

MQT ...

Ribo-seq
ATG 1 Erhard2018

HFF
3399976 159

ATG ...

MPL ...

Ribo-seq
ATG 1 Erhard2018
    sORF
HFF
3399985 498

GCT ...

AQP ...

Ribo-seq
GCT 1 Erhard2018

HFF
245178 171

ATG ...

MRA ...

Predicted
ATG 1 Samandi2017
    sORF
3399991 348

AAC ...

NTV ...

Ribo-seq
AAC 1 Erhard2018

HFF
3399982 337

ATG ...

MKV ...

Ribo-seq
ATG 1 Erhard2018

HFF
3399988 2235

ATG ...

MEQ ...

Ribo-seq
ATG 1 Erhard2018

HFF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS