Transcript 895824

Transcript

ID CARD

MetamORF ID

895824

ENST00000374166

Name

RPS6KA1-203

Strand

Biotype

protein_coding

Start-end positions

26529778-26575014

CDS Start-stop positions

26529921-26574201

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:10430

Aliases

ENSG00000117676,
HGNC:10430, HU-1, NCBI:6195,
OFF:RPS6KA1, p90Rsk, RPS6KA1,
RSK1

Chr 1

ORFs

3 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
895823	66	CGC ...	RRA ...	Ribo-seq	CGC	moderate	1	sORFs_org_Human	sORF Upstream	Jurkat
2314625	60	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, MDA-MB-231
1987480	45	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231

Export data