Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:66870

Aliases

1200009K13Rik
9330147J08Rik, AL022786, ENSMUSG00000036371
MGI:1914120, NCBI:66870, OFF:Serbp1
Pairbp1, Serbp1

Chromosome

6

Transcripts

151 ORFs
16 known transcripts
406 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

194098 ENSMUST00000203436 Serbp1-207 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

838969 201

TTG ...

LKS ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
839706 213

GTG ...

VKE ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
71482 75

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
1065512 42

ATG ...

MSG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71455 108

ATG ...

MDN ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
198137 36

CTG ...

LRG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
71239 99

CTG ...

LRK ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
v6-5
71724 96

GTG ...

VVA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, Neutrophil
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
1066005 120

CTG ...

LRK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil
839379 177

GTG ...

VKE ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, Neutrophil, v6-5
839786 60

TTG ...

LIL ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
71065 87

TTG ...

LFC ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
71285 60

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, MEF, Neutrophil
67776 45

TTG ...

LEE ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
70954 120

ATG ...

MKA ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
839605 90

GTG ...

VDV ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, v6-5
68516 36

TTG ...

LKR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil
207302 243

TTG ...

LIG ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
3465 36

TTG ...

LIG ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
3435 66

ATG ...

MDL ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
71370 69

GTG ...

VGV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, NSC
839619 84

GTG ...

VEW ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, v6-5
1066794 42

GTG ...

VNL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
839309 168

GTG ...

VNF ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
71572 57

CTG ...

LKI ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
906879 78

AGG ...

RKA ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71459 93

GTG ...

VAE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
71100 63

GTG ...

VVD ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14
69424 60

ATG ...

MRT ...

Ribo-seq
ATG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
v6-5
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
69196 51

CTG ...

LKI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
71021 81

GTG ...

VKS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
838667 189

TTG ...

LKK ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
838695 117

GTG ...

VVL ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
v6-5
71410 69

CTG ...

LWQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
Neutrophil, NSC, v6-5
1515757 51

GTG ...

VAS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
71532 87

CTG ...

LKV ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, v6-5
67510 54

ATG ...

MLK ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil, NSC
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, Neutrophil
71812 78

GTG ...

VVG ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Neutrophil, NSC,
v6-5
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, E14, MEF,
Neutrophil
838764 111

TTG ...

LEG ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
v6-5
70903 72

GTG ...

VAE ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
192208 ENSMUST00000203167 Serbp1-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1739071 33

TTG ...

LLV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
67776 45

TTG ...

LEE ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
838292 240

TTG ...

LEW ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
193943 60

GTG ...

VTE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
198137 36

CTG ...

LRG ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
68145 114

GTG ...

VEW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
68802 96

ATG ...

MDL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
193341 81

CTG ...

LKH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
1561775 30

GTG ...

VNF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
68007 90

TTG ...

LIL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
69424 60

ATG ...

MRT ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
67780 147

GTG ...

VVL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
835415 228

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
204939 39

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
202696 189

TTG ...

LFV ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil
69010 120

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF
838287 246

TTG ...

LSL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil
834781 78

ATG ...

MIC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF
69993 141

TTG ...

LEG ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Neutrophil
3442 ENSMUST00000042990 Serbp1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70964 129

TTG ...

LEG ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
1248830 96

AGG ...

RKH ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
69010 120

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
67510 54

ATG ...

MLK ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
71370 69

GTG ...

VGV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Testis
1243047 36

AGG ...

RPS ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
3515 36

GTG ...

VID ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E, Skin_tumor, Testis
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
71572 57

CTG ...

LKI ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Testis
71667 84

ATG ...

MDL ...

Ribo-seq
ATG

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Testis
3435 66

ATG ...

MDL ...

Ribo-seq
ATG

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
204939 39

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
69993 141

TTG ...

LEG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
415361 90

AGG ...

RNA ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12
71455 108

ATG ...

MDN ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
R1E, Testis
1248618 51

ATA ...

IRR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
71239 99

CTG ...

LRK ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Testis
68035 45

ATG ...

MTQ ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Testis
837989 66

GTG ...

VLG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
1248755 45

ATA ...

IVE ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
69424 60

ATG ...

MRT ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, Testis
71410 69

CTG ...

LWQ ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Testis
67776 45

TTG ...

LEE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
1249280 60

ATA ...

ILK ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
71724 96

GTG ...

VVA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
Testis
71065 87

TTG ...

LFC ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Testis
71558 108

GTG ...

VDV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
71489 231

GTG ...

VKE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
71285 60

GTG ...

VDV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Testis
71532 87

CTG ...

LKV ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, C2C12, E14,
MEF, R1E, Testis
68432 231

ATG ...

MCA ...

Ribo-seq
ATG

weak

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, MEF,
Spleen_B_cell, Testis
71059 261

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
910375 45

ATT ...

INR ...

Ribo-seq
ATT

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
67898 258

GTG ...

VPC ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell, Testis
68007 90

TTG ...

LIL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
70325 261

ATG ...

MVP ...

Ribo-seq
ATG

moderate

5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, MEF,
Spleen_B_cell, Testis
1065512 42

ATG ...

MSG ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
68372 279

TTG ...

LWP ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Spleen_B_cell, Testis
1249449 78

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
67988 81

GTG ...

VAS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71482 75

GTG ...

VGV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Testis
1248838 204

AAG ...

KKK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
68145 114

GTG ...

VEW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
71459 93

GTG ...

VAE ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Testis
71100 63

GTG ...

VVD ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
Testis
71343 186

GTG ...

VNF ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
69196 51

CTG ...

LKI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
71021 81

GTG ...

VKS ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Testis
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
67780 147

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
1248807 51

ATA ...

IGI ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
68802 96

ATG ...

MDL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71070 102

GTG ...

VEW ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
1249714 36

ATC ...

IFF ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
1808044 33

CTG ...

LSF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
R1E
71792 195

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
71023 219

TTG ...

LKS ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
71217 54

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
1807967 87

ATG ...

MLK ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    sORF
Glioma, Liver, MEF,
MESC, R1E
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
70954 120

ATG ...

MKA ...

Ribo-seq
ATG

7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, C2C12, Glioma,
Liver, MEF, MESC,
R1E, Testis
71812 78

GTG ...

VVG ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
Testis
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12, Testis
1249610 75

ATT ...

ILV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
71544 207

TTG ...

LKK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
70903 72

GTG ...

VAE ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
1249172 33

ATA ...

IDL ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1561775 30

GTG ...

VNF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
71310 135

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
3441 42

GTG ...

VEV ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E, Skin_tumor, Testis
71178 78

TTG ...

LIL ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Testis
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
71292 60

GTG ...

VNL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Testis
71186 69

GTG ...

VAS ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Testis
68516 36

TTG ...

LKR ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Testis
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

835529 93

ATG ...

MPF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
69993 141

TTG ...

LEG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
193341 81

CTG ...

LKH ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
202696 189

TTG ...

LFV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
67780 147

GTG ...

VVL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
838287 246

TTG ...

LSL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
68007 90

TTG ...

LIL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
69010 120

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
68145 114

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
68802 96

ATG ...

MDL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
69424 60

ATG ...

MRT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
834781 78

ATG ...

MIC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
193943 60

GTG ...

VTE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
836726 165

CTG ...

LDE ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
838292 240

TTG ...

LEW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
204939 39

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    NMD
    sORF
B_cell, Liver
835415 228

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    NMD
    sORF
B_cell
525404 ENSMUST00000203077 Serbp1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
71532 87

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71239 99

CTG ...

LRK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71370 69

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71558 108

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
71310 135

GTG ...

VVL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, Spleen_B_cell
71285 60

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
70954 120

ATG ...

MKA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
71455 108

ATG ...

MDN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
70964 129

TTG ...

LEG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, Spleen_B_cell
71482 75

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71065 87

TTG ...

LFC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71070 102

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
71100 63

GTG ...

VVD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
71021 81

GTG ...

VKS ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
415250 ENSMUST00000204206 Serbp1-210 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3045 66

ATG ...

MKA ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, C2C12, MEF
193943 60

GTG ...

VTE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1248393 147

ATT ...

IQN ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Intronic
    sORF
E14
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
836726 165

CTG ...

LDE ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF
1066005 120

CTG ...

LRK ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
193341 81

CTG ...

LKH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1246228 60

CTG ...

LHK ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
907125 117

AGG ...

RKH ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1247874 72

AAG ...

KGF ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
MEF
415249 108

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
C2C12
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

836726 165

CTG ...

LDE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
70903 72

GTG ...

VAE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
193943 60

GTG ...

VTE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
525721 ENSMUST00000204294 Serbp1-212 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70903 72

GTG ...

VAE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
2796 ENSMUST00000204293 Serbp1-211 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

194740 33

TTG ...

LFC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
71482 75

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Skin_tumor
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Skin_tumor
71100 63

GTG ...

VVD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
71812 78

GTG ...

VVG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
3435 66

ATG ...

MDL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
71285 60

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
207302 243

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
71370 69

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
71459 93

GTG ...

VAE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
3465 36

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
70903 72

GTG ...

VAE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
71724 96

GTG ...

VVA ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

834781 78

ATG ...

MIC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1242856 126

ATC ...

IRG ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
835415 228

TTG ...

LPV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC
1242874 141

ATT ...

IIE ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
1244677 42

AAG ...

KRE ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
1246922 48

AAG ...

KKK ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
1247127 153

ATA ...

IRR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
69993 141

TTG ...

LEG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
1244069 51

AAG ...

KGS ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1562312 93

TTG ...

LCI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
1687705 273

ATG ...

MSQ ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
67780 147

GTG ...

VVL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
68802 96

ATG ...

MDL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
838287 246

TTG ...

LSL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
415249 108

CTG ...

LKV ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
69424 60

ATG ...

MRT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
202696 189

TTG ...

LFV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
68007 90

TTG ...

LIL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
1243049 63

AGG ...

RWS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
838292 240

TTG ...

LEW ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
67776 45

TTG ...

LEE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF
906879 78

AGG ...

RKA ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1248272 42

AGG ...

RRP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
193943 60

GTG ...

VTE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC
1245217 81

AGG ...

RRP ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1245364 30

ACG ...

TWN ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1247820 99

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
1247386 78

AAG ...

KHE ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
69010 120

GTG ...

VDV ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, E14
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
907125 117

AGG ...

RKH ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
68145 114

GTG ...

VEW ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
193341 81

CTG ...

LKH ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF
1243752 69

AGG ...

RPR ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
1247903 33

ATA ...

IIA ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    CDS
    NMD
    sORF
E14
575463 ENSMUST00000205106 Serbp1-216 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70903 72

GTG ...

VAE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
1471570 228

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1471712 192

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
69548 39

GTG ...

VDV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
1471752 183

GTG ...

VNF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
69145 54

GTG ...

VGV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
2795 54

ATG ...

MDN ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
70281 57

GTG ...

VVG ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
1471997 132

GTG ...

VVL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
3045 66

ATG ...

MKA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1472028 126

TTG ...

LEG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
68717 75

GTG ...

VVA ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1472064 258

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
69379 48

GTG ...

VGV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
1471938 216

TTG ...

LKS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
194740 33

TTG ...

LFC ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1472120 204

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
69823 42

GTG ...

VVD ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver
578523 ENSMUST00000204034 Serbp1-208 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

838667 189

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
MEF
838969 201

TTG ...

LKS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
MEF
839605 90

GTG ...

VDV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    sORF
MEF
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
3T3, R1E
207302 243

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    sORF
MEF
69115 75

GTG ...

VKE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
3T3, R1E
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
3T3, R1E
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
3T3, R1E
199707 ENSMUST00000204810 Serbp1-213 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

69847 90

CTG ...

LGT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
68372 279

TTG ...

LWP ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, MEF, Neutrophil,
R1E
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, R1E
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
68432 231

ATG ...

MCA ...

Ribo-seq
ATG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
v6-5
70325 261

ATG ...

MVP ...

Ribo-seq
ATG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, R1E
1806841 78

ATG ...

MSE ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
R1E
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
198137 36

CTG ...

LRG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
67776 45

TTG ...

LEE ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
1562312 93

TTG ...

LCI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
834781 78

ATG ...

MIC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, R1E
67898 258

GTG ...

VPC ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, R1E
1247978 57

ATG ...

MVS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
906880 ENSMUST00000203054 Serbp1-202 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

193943 60

GTG ...

VTE ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
196846 75

TTG ...

LDQ ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
906879 78

AGG ...

RKA ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
198137 36

CTG ...

LRG ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
908109 144

ATC ...

IGP ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
909930 30

ACG ...

TTN ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
986281 ENSMUST00000204944 Serbp1-214 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70396 132

CTG ...

LQS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
68982 165

CTG ...

LKQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
67878 123

GTG ...

VEE ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
69879 177

TTG ...

LWE ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
70703 150

TTG ...

LAR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
198137 36

CTG ...

LRG ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Liver
415241 ENSMUST00000203402 Serbp1-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

69115 75

GTG ...

VKE ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
69875 105

TTG ...

LIG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
69847 90

CTG ...

LGT ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
C2C12, Liver
69985 33

TTG ...

LTT ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
69922 63

TTG ...

LKS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
70699 51

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
Liver
3188617 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

70954 120

ATG ...

MKA ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

151 ORFs
16 known transcripts
406 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

838969 201

TTG...

LKS...

TTG InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
1739071 33

TTG...

LLV...

TTG Intronic
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
70964 129

TTG...

LEG...

TTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Testis,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
839706 213

GTG...

VKE...

GTG InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
1248830 96

AGG...

RKH...

AGG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
835529 93

ATG...

MPF...

ATG NMD
sORF
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
68982 165

CTG...

LKQ...

CTG Alternative
Overlapping
sORF
Upstream
ncRNA
Intronic
Spleen_B_cell, MEF, Neutrophil,
Brain, E14, R1E,
Testis, 3T3, B_cell,
BMDC, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3045 66

ATG...

MKA...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD
BMDC, C2C12, MEF,
Brain, Skin_tumor, R1E,
3T3, B_cell, Liver,
Testis, E14, Neutrophil,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
4 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
2 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
836726 165

CTG...

LDE...

CTG Downstream
NMD
sORF
Intronic
R1E, BMDC, E14,
MEF, B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
3 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
70903 72

GTG...

VAE...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Spleen_B_cell, 3T3, BMDC,
R1E, Liver, Brain,
MEF, Testis, B_cell,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
2 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
9 sORFs_org_Mouse
69993 141

TTG...

LEG...

TTG NMD
sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, Brain, Testis,
BMDC, E14, MEF,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
69010 120

GTG...

VDV...

GTG Alternative
InCDS
Overlapping
sORF
NMD
Intronic
Brain, Testis, B_cell,
BMDC, E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
67776 45

TTG...

LEE...

TTG Intronic
sORF
InCDS
Overlapping
NMD
ncRNA
Brain, MEF, Testis,
BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
strong 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
69823 42

GTG...

VVD...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Spleen_B_cell, Brain, MEF,
Testis, B_cell, E14,
Neutrophil, NSC, v6-5,
R1E, Liver, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
2 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
3 sORFs_org_Mouse
193341 81

CTG...

LKH...

CTG NMD
sORF
Intronic
InCDS
Overlapping
B_cell, Liver, MEF,
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
67510 54

ATG...

MLK...

ATG Alternative
InCDS
Overlapping
sORF
Brain, Testis, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
194740 33

TTG...

LFC...

TTG Alternative
InCDS
Overlapping
sORF
NMD
Downstream
Intronic
Brain, B_cell, Liver,
R1E, MEF, E14,
Neutrophil, NSC, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
69379 48

GTG...

VGV...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Spleen_B_cell, MEF, B_cell,
Brain, E14, Neutrophil,
NSC, v6-5, Testis,
Liver, 3T3, BMDC,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
2 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
3 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
71370 69

GTG...

VGV...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Liver,
MEF, Testis, B_cell,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
834781 78

ATG...

MIC...

ATG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
ncRNA
MEF, B_cell, Brain,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1243047 36

AGG...

RPS...

AGG Alternative
Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3515 36

GTG...

VID...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, Brain, MEF,
R1E, Skin_tumor, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
71482 75

GTG...

VGV...

GTG Alternative
InCDS
Overlapping
sORF
Liver, B_cell, Brain,
E14, MEF, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
193943 60

GTG...

VTE...

GTG Intronic
sORF
NMD
Alternative
Downstream
Overlapping
MEF, Liver, Brain,
B_cell, R1E, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
70396 132

CTG...

LQS...

CTG Intronic
sORF
Alternative
Overlapping
Upstream
ncRNA
NMD
B_cell, Brain, MEF,
BMDC, Liver, Spleen_B_cell,
R1E, 3T3, Testis,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
1242856 126

ATC...

IRG...

ATC InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
67878 123

GTG...

VEE...

GTG Alternative
Overlapping
sORF
Upstream
Intronic
ncRNA
NMD
Spleen_B_cell, B_cell, Brain,
MEF, BMDC, Liver,
R1E, C2C12, Testis,
E14, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
moderate 2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
835415 228

TTG...

LPV...

TTG Alternative
InCDS
NMD
Overlapping
sORF
Intronic
BMDC, MEF, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
69879 177

TTG...

LWE...

TTG Alternative
Overlapping
sORF
Upstream
ncRNA
Intronic
Liver, 3T3, Brain,
R1E, MEF, Neutrophil,
v6-5, Spleen_B_cell, BMDC,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
71572 57

CTG...

LKI...

CTG InCDS
Overlapping
sORF
Brain, MEF, R1E,
Testis, B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
838292 240

TTG...

LEW...

TTG Intronic
sORF
NMD
Alternative
InCDS
Overlapping
MEF, Neutrophil, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
70699 51

TTG...

LKK...

TTG Intronic
sORF
NMD
InCDS
Overlapping
Brain, MEF, 3T3,
R1E, B_cell, Spleen_B_cell,
Testis, Neutrophil, NSC,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
838667 189

TTG...

LKK...

TTG sORF
InCDS
Overlapping
MEF, B_cell, E14,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
71667 84

ATG...

MDL...

ATG Alternative
InCDS
Overlapping
sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
Johnstone2016
69847 90

CTG...

LGT...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
NMD
Intronic
Brain, E14, MEF,
Neutrophil, NSC, v6-5,
R1E, C2C12, Liver,
BMDC, B_cell, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 8 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
moderate 1 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
3435 66

ATG...

MDL...

ATG Alternative
InCDS
Overlapping
sORF
Glioma, Liver, MEF,
MESC, Skin_tumor, B_cell,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 Johnstone2016
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
71532 87

CTG...

LKV...

CTG InCDS
Overlapping
sORF
Spleen_B_cell, Brain, C2C12,
E14, MEF, R1E,
Testis, B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1248393 147

ATT...

IQN...

ATT Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
68372 279

TTG...

LWP...

TTG ncRNA
sORF
Alternative
Overlapping
Upstream
BMDC, MEF, Neutrophil,
R1E, B_cell, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
4 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
70703 150

TTG...

LAR...

TTG Alternative
Overlapping
sORF
Upstream
Intronic
ncRNA
Spleen_B_cell, 3T3, Testis,
Liver, Brain, R1E,
BMDC, MEF, Neutrophil,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
196846 75

TTG...

LDQ...

TTG Alternative
Downstream
NMD
Overlapping
sORF
Intronic
BMDC, B_cell, Liver,
Brain, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
strong 2 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
strong 1 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
204939 39

GTG...

VKE...

GTG InCDS
Overlapping
sORF
NMD
Intronic
Brain, B_cell, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
202696 189

TTG...

LFV...

TTG NMD
sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, BMDC, MEF,
Brain, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
67780 147

GTG...

VVL...

GTG NMD
sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, BMDC, Brain,
MEF, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1242874 141

ATT...

IIE...

ATT InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1065512 42

ATG...

MSG...

ATG Alternative
InCDS
Overlapping
sORF
MEF, Neutrophil, Brain,
Glioma, Liver, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
70281 57

GTG...

VVG...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Spleen_B_cell, Brain, MEF,
Testis, B_cell, E14,
Neutrophil, NSC, v6-5,
3T3, BMDC, Liver,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
10 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
3 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
69115 75

GTG...

VKE...

GTG InCDS
Overlapping
sORF
Intronic
NMD
E14, MEF, Neutrophil,
NSC, v6-5, Liver,
3T3, R1E, Brain,
Spleen_B_cell, B_cell, Testis,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
69548 39

GTG...

VDV...

GTG Alternative
Downstream
NMD
sORF
InCDS
Overlapping
R1E, Spleen_B_cell, 3T3,
BMDC, Liver, Brain,
B_cell, E14, MEF,
Neutrophil, NSC, v6-5,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
3 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
198137 36

CTG...

LRG...

CTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
B_cell, Brain, MEF,
NSC, R1E, BMDC,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
71239 99

CTG...

LRK...

CTG InCDS
Overlapping
sORF
Spleen_B_cell, B_cell, MEF,
Neutrophil, v6-5, Brain,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
71455 108

ATG...

MDN...

ATG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
NSC, v6-5, Brain,
Liver, R1E, Testis,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
2795 54

ATG...

MDN...

ATG Alternative
InCDS
Overlapping
sORF
NMD
Downstream
Intronic
Brain, Skin_tumor, E14,
MEF, Neutrophil, NSC,
v6-5, 3T3, BMDC,
B_cell, Liver, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
69145 54

GTG...

VGV...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Brain, MEF, Testis,
B_cell, E14, Neutrophil,
NSC, v6-5, Spleen_B_cell,
3T3, BMDC, Liver,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
9 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
3 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
68145 114

GTG...

VEW...

GTG Intronic
sORF
NMD
Alternative
InCDS
Overlapping
Brain, MEF, B_cell,
Testis, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1244677 42

AAG...

KRE...

AAG InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
71724 96

GTG...

VVA...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, MEF, v6-5,
Brain, Liver, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
69875 105

TTG...

LIG...

TTG InCDS
NMD
Overlapping
sORF
Intronic
BMDC, 3T3, R1E,
E14, MEF, Neutrophil,
NSC, v6-5, Liver,
Spleen_B_cell, Brain, B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1471570 228

GTG...

VKE...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
415361 90

AGG...

RNA...

AGG Alternative
Overlapping
sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
71100 63

GTG...

VVD...

GTG Alternative
InCDS
Overlapping
sORF
Liver, Brain, MEF,
Testis, B_cell, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1471712 192

GTG...

VKE...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1246922 48

AAG...

KKK...

AAG InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
839605 90

GTG...

VDV...

GTG sORF
Alternative
InCDS
Overlapping
MEF, B_cell, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
71558 108

GTG...

VDV...

GTG Alternative
InCDS
Overlapping
sORF
Spleen_B_cell, Brain, E14,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1248618 51

ATA...

IRR...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
68432 231

ATG...

MCA...

ATG ncRNA
sORF
Alternative
Overlapping
Upstream
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
v6-5, B_cell, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
13 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
1247127 153

ATA...

IRR...

ATA Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
69985 33

TTG...

LTT...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
ncRNA
NMD
Liver, B_cell, Brain,
MEF, Neutrophil, R1E,
BMDC, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
2 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
986281 ENSMUST00000204944 Serbp1-214 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1471752 183

GTG...

VNF...

GTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1066005 120

CTG...

LRK...

CTG InCDS
Overlapping
sORF
Intronic
Neutrophil, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
1 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
838287 246

TTG...

LSL...

TTG NMD
sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
207302 243

TTG...

LIG...

TTG sORF
InCDS
Overlapping
MEF, Brain, B_cell,
E14, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
68007 90

TTG...

LIL...

TTG NMD
sORF
Alternative
InCDS
Overlapping
Intronic
B_cell, Testis, BMDC,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
71812 78

GTG...

VVG...

GTG Alternative
InCDS
Overlapping
sORF
Liver, Brain, MEF,
Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
1244069 51

AAG...

KGS...

AAG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
68035 45

ATG...

MTQ...

ATG Alternative
Downstream
Overlapping
sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
1562312 93

TTG...

LCI...

TTG Alternative
InCDS
NMD
Overlapping
sORF
ncRNA
MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
1 sORFs_org_Mouse
68802 96

ATG...

MDL...

ATG Intronic
sORF
NMD
Alternative
InCDS
Overlapping
MEF, B_cell, BMDC,
E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
837989 66

GTG...

VLG...

GTG Alternative
sORF
Upstream
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1248755 45

ATA...

IVE...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
839379 177

GTG...

VKE...

GTG InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
71310 135

GTG...

VVL...

GTG Alternative
InCDS
Overlapping
sORF
Neutrophil, Spleen_B_cell, Brain,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
839786 60

TTG...

LIL...

TTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
70954 120

ATG...

MKA...

ATG sORF
Alternative
InCDS
Overlapping
B_cell, E14,
MEF, NSC, v6-5,
Spleen_B_cell, Brain, C2C12,
Glioma, Liver, MESC,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3188617 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
Johnstone2016
69922 63

TTG...

LKS...

TTG sORF
InCDS
NMD
Overlapping
Intronic
3T3, R1E, BMDC,
E14, B_cell, Spleen_B_cell,
Brain, MEF, Liver,
Neutrophil, NSC, v6-5,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

578523 ENSMUST00000204034 Serbp1-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
2 sORFs_org_Mouse
415241 ENSMUST00000203402 Serbp1-206 retained_intron Ribo-seq
1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1687705 273

ATG...

MSQ...

ATG Alternative
InCDS
NMD
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
69424 60

ATG...

MRT...

ATG Alternative
InCDS
Overlapping
sORF
NMD
Intronic
Brain, Glioma, Liver,
MEF, MESC, Testis,
B_cell, BMDC, E14,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
834751 ENSMUST00000204135 Serbp1-209 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
2 sORFs_org_Mouse
192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
71065 87

TTG...

LFC...

TTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
NSC, v6-5, Brain,
R1E, Testis, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
5 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
71410 69

CTG...

LWQ...

CTG InCDS
Overlapping
sORF
Brain, MEF, R1E,
Testis, B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
1249280 60

ATA...

ILK...

ATA InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
70325 261

ATG...

MVP...

ATG ncRNA
sORF
Alternative
Overlapping
Upstream
BMDC, Brain, E14,
MEF, Neutrophil, R1E,
3T3, B_cell, Spleen_B_cell,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
7 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
71285 60

GTG...

VDV...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, Liver,
MEF, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
2 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
1246228 60

CTG...

LHK...

CTG Intronic
sORF
E14, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
2 sORFs_org_Mouse
71489 231

GTG...

VKE...

GTG InCDS
Overlapping
sORF
Brain, E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
907125 117

AGG...

RKH...

AGG Intronic
sORF
Downstream
NMD
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
68516 36

TTG...

LKR...

TTG Alternative
InCDS
Overlapping
sORF
MEF, Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
71059 261

TTG...

LIG...

TTG InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
910375 45

ATT...

INR...

ATT Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1247874 72

AAG...

KGF...

AAG Intronic
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
67898 258

GTG...

VPC...

GTG Alternative
Overlapping
sORF
Upstream
ncRNA
3T3, B_cell, MEF,
Spleen_B_cell, Testis, BMDC,
Brain, E14, Neutrophil,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
7 sORFs_org_Mouse
415249 108

CTG...

LKV...

CTG Downstream
NMD
sORF
Intronic
E14, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
415250 ENSMUST00000204206 Serbp1-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
3465 36

TTG...

LIG...

TTG Alternative
InCDS
Overlapping
sORF
MEF, NSC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
1471997 132

GTG...

VVL...

GTG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1249449 78

AAG...

KST...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1561775 30

GTG...

VNF...

GTG Intronic
sORF
InCDS
Overlapping
MEF, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

192208 ENSMUST00000203167 Serbp1-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1472028 126

TTG...

LEG...

TTG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1806841 78

ATG...

MSE...

ATG ncRNA
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
1 sORFs_org_Mouse
67988 81

GTG...

VAS...

GTG Alternative
InCDS
Overlapping
sORF
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
839619 84

GTG...

VEW...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
7 sORFs_org_Mouse
1248838 204

AAG...

KKK...

AAG InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1066794 42

GTG...

VNL...

GTG Alternative
InCDS
Overlapping
sORF
MEF, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
71459 93

GTG...

VAE...

GTG Alternative
InCDS
Overlapping
sORF
Liver, Brain, E14,
MEF, Testis, B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
906879 78

AGG...

RKA...

AGG Intronic
sORF
Alternative
InCDS
Overlapping
NMD
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
weak 1 sORFs_org_Mouse
839309 168

GTG...

VNF...

GTG InCDS
Overlapping
sORF
B_cell, E14, MEF,
Neutrophil, NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
8 sORFs_org_Mouse
68717 75

GTG...

VVA...

GTG Alternative
InCDS
Overlapping
sORF
Downstream
NMD
3T3, BMDC, Brain,
MEF, Testis, B_cell,
E14, Neutrophil, NSC,
v6-5, Spleen_B_cell, R1E,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
2 sORFs_org_Mouse
3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
9 sORFs_org_Mouse
525721 ENSMUST00000204294 Serbp1-212 protein_coding Ribo-seq
1 sORFs_org_Mouse
1807653 ENSMUST00000205091 Serbp1-215 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
2796 ENSMUST00000204293 Serbp1-211 protein_coding Ribo-seq
1 sORFs_org_Mouse
71343 186

GTG...

VNF...

GTG InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1243049 63

AGG...

RWS...

AGG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
69196 51

CTG...

LKI...

CTG Alternative
InCDS
Overlapping
sORF
Brain, Testis, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
71021 81

GTG...

VKS...

GTG InCDS
Overlapping
sORF
Brain, MEF, R1E,
Testis, B_cell, v6-5,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
3 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1472064 258

TTG...

LIG...

TTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1248272 42

AGG...

RRP...

AGG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1248807 51

ATA...

IGI...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71070 102

GTG...

VEW...

GTG Alternative
InCDS
Overlapping
sORF
Brain, Testis, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
525404 ENSMUST00000203077 Serbp1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1249714 36

ATC...

IFF...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1245217 81

AGG...

RRP...

AGG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1245364 30

ACG...

TWN...

ACG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1247820 99

AAG...

KST...

AAG Downstream
NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1808044 33

CTG...

LSF...

CTG Alternative
Downstream
sORF
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1247386 78

AAG...

KHE...

AAG InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
838695 117

GTG...

VVL...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
1471938 216

TTG...

LKS...

TTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
71792 195

GTG...

VKE...

GTG InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
71023 219

TTG...

LKS...

TTG InCDS
Overlapping
sORF
Brain, E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
71217 54

TTG...

LIG...

TTG Alternative
InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1515757 51

GTG...

VAS...

GTG Alternative
InCDS
Overlapping
sORF
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
4 sORFs_org_Mouse
1807967 87

ATG...

MLK...

ATG Alternative
Downstream
sORF
Glioma, Liver, MEF,
MESC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
908109 144

ATC...

IGP...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1249610 75

ATT...

ILV...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
71544 207

TTG...

LKK...

TTG InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1472120 204

TTG...

LKK...

TTG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

575463 ENSMUST00000205106 Serbp1-216 protein_coding Ribo-seq
1 sORFs_org_Mouse
1249172 33

ATA...

IDL...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
3441 42

GTG...

VEV...

GTG Alternative
InCDS
Overlapping
sORF
B_cell, Brain, MEF,
R1E, Skin_tumor, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
7 sORFs_org_Mouse
71178 78

TTG...

LIL...

TTG Alternative
InCDS
Overlapping
sORF
Brain, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1243752 69

AGG...

RPR...

AGG Alternative
InCDS
NMD
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
1247978 57

ATG...

MVS...

ATG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

199707 ENSMUST00000204810 Serbp1-213 processed_transcript Ribo-seq
1 sORFs_org_Mouse
838764 111

TTG...

LEG...

TTG Alternative
InCDS
Overlapping
sORF
B_cell, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

194098 ENSMUST00000203436 Serbp1-207 protein_coding Ribo-seq
6 sORFs_org_Mouse
71292 60

GTG...

VNL...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
1247903 33

ATA...

IIA...

ATA CDS
NMD
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

1242857 ENSMUST00000203233 Serbp1-205 nonsense_mediated_decay Ribo-seq
1 sORFs_org_Mouse
909930 30

ACG...

TTN...

ACG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

906880 ENSMUST00000203054 Serbp1-202 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
71186 69

GTG...

VAS...

GTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3442 ENSMUST00000042990 Serbp1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5