Transcript 834751

Transcript

ID CARD

MetamORF ID

834751

ENSMUST00000204135

Name

Serbp1-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

67267330-67281803

CDS Start-stop positions

-67272886

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:66870

Aliases

1200009K13Rik,
9330147J08Rik, AL022786, ENSMUSG00000036371,
MGI:1914120, NCBI:66870, OFF:Serbp1,
Pairbp1, Serbp1

Chr 6

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
835529	93	ATG ...	MPF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
69993	141	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
193341	81	CTG ...	LKH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
202696	189	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
196846	75	TTG ...	LDQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
67780	147	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
194740	33	TTG ...	LFC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
838287	246	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
68007	90	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
69010	120	GTG ...	VDV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
68145	114	GTG ...	VEW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
68802	96	ATG ...	MDL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
70699	51	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
69424	60	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
834781	78	ATG ...	MIC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
193943	60	GTG ...	VTE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
2795	54	ATG ...	MDN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
836726	165	CTG ...	LDE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
69922	63	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
3045	66	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
838292	240	TTG ...	LEW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
69115	75	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
204939	39	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	B_cell
69875	105	TTG ...	LIG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Liver
835415	228	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell

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