Transcript 415250

Transcript

ID CARD

MetamORF ID

415250

ENSMUST00000204206

Name

Serbp1-210

Strand

Biotype

retained_intron

Start-end positions

67271879-67281820

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:66870

Aliases

1200009K13Rik,
9330147J08Rik, AL022786, ENSMUSG00000036371,
MGI:1914120, NCBI:66870, OFF:Serbp1,
Pairbp1, Serbp1

Chr 6

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3045	66	ATG ...	MKA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12, MEF
193943	60	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1248393	147	ATT ...	IQN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
196846	75	TTG ...	LDQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
836726	165	CTG ...	LDE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
1066005	120	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
193341	81	CTG ...	LKH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1246228	60	CTG ...	LHK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
907125	117	AGG ...	RKH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1247874	72	AAG ...	KGF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
2795	54	ATG ...	MDN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
194740	33	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
415249	108	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12

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