ORF 70396 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

70396

Chromosome

Strand

Start-stop positions

67267059-67267190

Nucleic length (bp)

132

Sequences

Nucleic sequence

CTG ...

Amino acid sequence

LQS ...

Spliced: No

Exons

Exons start-end

Genome browsers

UCSC

Transcripts

10 known transcripts

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
192208	ENSMUST00000203167	retained_intron	NCBI:66870	49 - 180	Ribo-seq	GGTCCGCTGC	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
986281	ENSMUST00000204944	retained_intron	NCBI:66870	72 - 203	Ribo-seq	GGTCCGCTGC	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
2796	ENSMUST00000204293	protein_coding	NCBI:66870	50 - 181	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
525404	ENSMUST00000203077	protein_coding	NCBI:66870	49 - 180	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
199707	ENSMUST00000204810	processed_transcript	NCBI:66870	-	Ribo-seq			2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
575463	ENSMUST00000205106	protein_coding	NCBI:66870	55 - 186	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
3442	ENSMUST00000042990	protein_coding	NCBI:66870	436 - 567	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
906880	ENSMUST00000203054	retained_intron	NCBI:66870	44 - 175	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
194098	ENSMUST00000203436	protein_coding	NCBI:66870	77 - 208	Ribo-seq	GGTCCGCTGC	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil
1242857	ENSMUST00000203233	nonsense_mediated_decay	NCBI:66870	22 - 153	Ribo-seq	GGTCCGCTGC	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF

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