Gene NCBI:20397 | MetamORF

Gene

ID CARD

NCBI:20397

Aliases

AI428538
D10Xrf456, ENSMUSG00000020097, MGI:1261415
NCBI:20397, OFF:Sgpl1, S1PL
Sgpl1, Spl

Chromosome

Transcripts

123 ORFs
9 known transcripts
249 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

2125

ENSMUST00000150258

Sgpl1-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
257994	99	CTG ...	LVA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, MEF, R1E, Spleen_B_cell
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
2685	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, NSC, R1E, Skin_tumor
5670	45	ATG ...	MLK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, NSC, R1E, Skin_tumor
197214	258	GTG ...	VMY ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Spleen_B_cell
255553	132	GTG ...	VDK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, NSC, R1E
513606	87	ATG ...	MWM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
229410	261	GTG ...	VVM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
7482	42	TTG ...	LKL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, R1E, Skin_tumor
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Spleen_B_cell
176780	72	CTG ...	LEK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
1513288	114	CTG ...	LSY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
82858	117	CTG ...	LGG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
242645	147	TTG ...	LSV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Neutrophil, NSC, R1E
518149	87	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
586553	30	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
582551	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1817388	117	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell
243834	132	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Neutrophil, R1E
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
519824	45	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Skin_tumor
600507	60	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1520517	144	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
622284	36	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
60162	159	TTG ...	LAV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
1734501	69	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	Liver, MEF, NSC, Spleen_B_cell
521344	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
636138	120	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
4366	30	ATG ...	MGD ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell
631412	132	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
7566	72	TTG ...	LDC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell
428014	84	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
214963	189	CTG ...	LEN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, MEF, Neutrophil, NSC, R1E
1082736	66	ATG ...	MDI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, NSC
1178294	66	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, NSC
200300	93	CTG ...	LMA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
71249	33	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
526412	93	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
520714	33	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
196984	123	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E
247459	120	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Neutrophil, R1E
928733	48	ATG ...	MSP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, NSC
163586	69	GTG ...	VIL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
247918	180	GTG ...	VSK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Neutrophil, NSC, R1E
58897	129	GTG ...	VDA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
1515605	99	TTG ...	LYF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
424140	39	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC, R1E, Spleen_B_cell
527875	96	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, NSC, Spleen_B_cell
507053	48	CTG ...	LAH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
907345	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
902668	57	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
625666	45	GTG ...	VPM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
238631	48	GTG ...	VKG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
532520	48	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
75745	36	CTG ...	LVA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
1882271	105	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
426791	66	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
1060844	126	TTG ...	LMH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, Neutrophil
519965	63	ATG ...	MEN ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, NSC, Spleen_B_cell
257935	45	GTG ...	VTQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell

287804

ENSMUST00000092498

Sgpl1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
928686	33	ATA ...	ILG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
519965	63	ATG ...	MEN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1263977	60	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
903403	30	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
438338	102	ATG ...	MGN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
929260	126	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
527875	96	CTG ...	LAR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
7870	30	ATG ...	MGD ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
617944	90	ATG ...	MAW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC
426791	66	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
4366	30	ATG ...	MGD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1082736	66	ATG ...	MDI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
586553	30	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
7482	42	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
445073	111	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
622284	36	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
910978	75	ACG ...	TRS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929135	180	AGG ...	RFW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929256	51	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
444816	144	ATG ...	MVP ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
287803	108	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
445120	183	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
519824	45	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
521344	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
513606	87	ATG ...	MWM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
520714	33	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2685	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
768455	156	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
602384	99	GTG ...	VPS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
582551	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
532520	48	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
928748	78	AGG ...	RQP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1232098	30	AAG ...	KVV ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1266902	69	AAG ...	KHS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
767536	150	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
445194	66	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
442261	204	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
1260040	51	ACG ...	TAM ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
440113	81	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
5670	45	ATG ...	MLK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC
902142	75	ATC ...	ISK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1282271	123	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

7871

ENSMUST00000122259

Sgpl1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
519824	45	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, v6-5
902668	57	TTG ...	LFP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
900578	33	ATC ...	IQI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
903403	30	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
768455	156	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
444816	144	ATG ...	MVP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, NSC
929135	180	AGG ...	RFW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7482	42	TTG ...	LKL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
917750	30	ATA ...	ISG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928871	30	ACG ...	TVL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
445120	183	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, NSC
507053	48	CTG ...	LAH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
902840	63	ATT ...	IPK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928609	69	AAG ...	KKG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
4366	30	ATG ...	MGD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
527875	96	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14
71249	33	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Testis
513606	87	ATG ...	MWM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, v6-5
519965	63	ATG ...	MEN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
442261	204	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, NSC
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Testis, v6-5
1082736	66	ATG ...	MDI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
445194	66	CTG ...	LLR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, v6-5
600507	60	GTG ...	VWL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
440113	81	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
2685	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF
928686	33	ATA ...	ILG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
928911	129	AAG ...	KHP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
910978	75	ACG ...	TRS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928748	78	AGG ...	RQP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
929090	69	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
438338	102	ATG ...	MGN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, NSC
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1178294	66	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, v6-5
921513	33	AGG ...	RCD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
622284	36	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
75745	36	CTG ...	LVA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Testis
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
287803	108	ATG ...	MSL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC, v6-5
445073	111	CTG ...	LCT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, NSC
929256	51	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
520714	33	ATG ...	MAM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, v6-5
928733	48	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
521344	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, v6-5
443676	114	CTG ...	LRG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
929260	126	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
902142	75	ATC ...	ISK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
914765	30	ATC ...	ISH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
163586	69	GTG ...	VIL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, v6-5
7870	30	ATG ...	MGD ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, Skin_tumor
929408	132	AAG ...	KKG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
532520	48	TTG ...	LLV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, v6-5
586553	30	CTG ...	LLG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14
582551	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
625666	45	GTG ...	VPM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
907345	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, v6-5
5670	45	ATG ...	MLK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF
767536	150	CTG ...	LQM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC

163587

ENSMUST00000143225

Sgpl1-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
243834	132	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
636138	120	CTG ...	LLF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
163586	69	GTG ...	VIL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
196984	123	GTG ...	VAI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
257935	45	GTG ...	VTQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
617944	90	ATG ...	MAW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
602384	99	GTG ...	VPS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
7566	72	TTG ...	LDC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
242645	147	TTG ...	LSV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
257994	99	CTG ...	LVA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
214963	189	CTG ...	LEN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain

89752

ENSMUST00000142192

Sgpl1-206

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918729	72	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
904984	60	ATT ...	IAP ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
907345	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
90428	258	TTG ...	LES ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
838402	63	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
928733	48	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
89751	267	TTG ...	LEI ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
913383	264	AAG ...	KNY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
922789	189	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
928754	54	ATT ...	IGL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
916767	54	ATC ...	IIF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
900291	222	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
914029	78	ACG ...	TQR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
428014	84	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
919643	48	ATT ...	IWR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
928721	63	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
928779	45	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

58898

ENSMUST00000152316

Sgpl1-209

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
424140	39	GTG ...	VTS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
921513	33	AGG ...	RCD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
60162	159	TTG ...	LAV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
176780	72	CTG ...	LEK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
631412	132	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
238631	48	GTG ...	VKG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
58897	129	GTG ...	VDA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Testis
82858	117	CTG ...	LGG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3

611631

ENSMUST00000155919

Sgpl1-210

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, MEF
440113	81	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, MEF
287803	108	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF

198886

ENSMUST00000126307

Sgpl1-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Brain
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	Brain
1274608	48	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1282906	75	ACG ...	TQR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
914029	78	ACG ...	TQR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14

3023866

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
617944	90	ATG ...	MAW ...	Predicted	ATG		1	Samandi2017	sORF
444816	144	ATG ...	MVP ...	Predicted	ATG		1	Samandi2017	sORF
287803	108	ATG ...	MSL ...	Predicted	ATG		1	Samandi2017	sORF

767940

ENSMUST00000137833

Sgpl1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
440113	81	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell

ORFs

123 ORFs
9 known transcripts
249 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

257994

CTG...

LVA...

CTG

Alternative
Downstream
NMD
sORF
Intronic

Liver, MEF, R1E,
Spleen_B_cell, 3T3, BMDC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

928686

ATA...

ILG...

ATA

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

519824

TTG...

LVQ...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, v6-5,
Liver, Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

243834

132

CTG...

LGS...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

Brain, Liver, Neutrophil,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

918729

AGG...

RQG...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

434259

ATG...

MVP...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Spleen_B_cell, BMDC,
B_cell, 3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse

902668

TTG...

LFP...

TTG

InCDS
Overlapping
sORF
Alternative
NMD

BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

900578

ATC...

IQI...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

224494

CTG...

LCT...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

BMDC, Brain, Neutrophil,
Spleen_B_cell, 3T3, MEF,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

904984

ATT...

IAP...

ATT

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse

636138

120

CTG...

LLF...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

519965

ATG...

MEN...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, E14, BMDC,
Liver, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

166590

GTG...

VYS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

Spleen_B_cell, BMDC, MEF,
v6-5, Brain, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

903403

ATC...

ILK...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

768455

156

CTG...

LFL...

CTG

Alternative
InCDS
Overlapping
sORF

NSC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

444816

144

ATG...

MVP...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, NSC,
B_cell, Glioma, Liver,
MEF, MESC, Spleen_B_cell,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
3023866	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

929135

180

AGG...

RFW...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

424140

GTG...

VTS...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, BMDC, MEF,
NSC, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

1263977

AAG...

KPQ...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

2685

GTG...

VRT...

GTG

InCDS
NMD
Overlapping
sORF
Alternative

Brain, MEF, NSC,
R1E, Skin_tumor, 3T3,
BMDC, E14, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	5	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

73720

CTG...

LHY...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

B_cell, E14, BMDC,
Testis, v6-5, Liver,
MEF, NSC, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

7482

TTG...

LKL...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, MEF,
Brain, R1E, Skin_tumor,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

907345

TTG...

LRG...

TTG

ncRNA
sORF
InCDS
NMD
Overlapping
Alternative

BMDC, Brain, MEF,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

438338

102

ATG...

MGN...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, MEF,
Spleen_B_cell, 3T3, BMDC,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

5670

ATG...

MLK...

ATG

InCDS
NMD
Overlapping
sORF
Alternative

Brain, NSC, R1E,
Skin_tumor, B_cell, E14,
Glioma, Liver, MEF,
MESC, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

917750

ATA...

ISG...

ATA

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

197214

258

GTG...

VMY...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

921513

AGG...

RCD...

AGG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

90428

258

TTG...

LES...

TTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
NSC, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		11	sORFs_org_Mouse

2124

TTG...

LQK...

TTG

Intronic
sORF
Alternative
Downstream
NMD
InCDS
Overlapping

3T3, BMDC, Brain,
MEF, Skin_tumor, B_cell,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

163586

GTG...

VIL...

GTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, BMDC, Brain,
MEF, NSC, Spleen_B_cell,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

227239

ATG...

MGN...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Neutrophil, Spleen_B_cell,
3T3, MEF, B_cell,
E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq		2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

928871

ACG...

TVL...

ACG

Alternative
Downstream
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

198885

GTG...

VEC...

GTG

sORF
ncRNA
Alternative
InCDS
NMD
Overlapping

MEF, Brain, E14,
Spleen_B_cell, BMDC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
198886	ENSMUST00000126307	Sgpl1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

929260

126

ATC...

ILK...

ATC

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

445120

183

CTG...

LRF...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, NSC,
B_cell, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

527875

CTG...

LAR...

CTG

InCDS
Overlapping
sORF
Alternative
NMD

B_cell, 3T3, BMDC,
E14, Brain, Liver,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse

838402

GTG...

VRW...

GTG

ncRNA
sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

507053

CTG...

LAH...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

255553

132

GTG...

VDK...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

902840

ATT...

IPK...

ATT

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

60162

159

TTG...

LAV...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, Brain, Testis,
Liver, MEF, NSC,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

176780

CTG...

LEK...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, BMDC, Brain,
Liver, MEF, NSC,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

7870

ATG...

MGD...

ATG

Alternative
InCDS
Overlapping
sORF

Glioma, Liver, MEF,
MESC, Spleen_B_cell, 3T3,
BMDC, Brain, Neutrophil,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

196984

123

GTG...

VAI...

GTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

928609

AAG...

KKG...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

257935

GTG...

VTQ...

GTG

Intronic
sORF
Alternative
Downstream
NMD

3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse

4366

ATG...

MGD...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, MEF,
B_cell, Brain, Liver,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

617944

ATG...

MAW...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, E14, Glioma,
Liver, MEF, MESC,
3T3, BMDC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
3023866	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

513606

ATG...

MWM...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Spleen_B_cell, 3T3,
BMDC, v6-5, B_cell,
Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

229410

261

GTG...

VVM...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse

426791

GTG...

VEQ...

GTG

InCDS
Overlapping
sORF
Alternative
NMD

B_cell, E14, MEF,
NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

510851

111

CTG...

LSD...

CTG

InCDS
Overlapping
sORF
Alternative
NMD
Intronic

v6-5, NSC, Spleen_B_cell,
B_cell, E14, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1082736

ATG...

MDI...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, BMDC, v6-5,
Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

427574

ATG...

MLV...

ATG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

NSC, Spleen_B_cell, 3T3,
E14, BMDC, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1513288

114

CTG...

LSY...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

213667

CTG...

LAA...

CTG

sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

Brain, Liver, MEF,
NSC, Spleen_B_cell, BMDC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
198886	ENSMUST00000126307	Sgpl1-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	strong	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

267897

TTG...

LTG...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

B_cell, E14, MEF,
3T3, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

586553

CTG...

LLG...

CTG

InCDS
Overlapping
sORF
Alternative
NMD

E14, Liver, NSC,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

82858

117

CTG...

LGG...

CTG

InCDS
NMD
Overlapping
sORF
Intronic

Brain, Liver, MEF,
NSC, R1E, Spleen_B_cell,
3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

71249

GTG...

VAS...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, Testis,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

928733

ATG...

MSP...

ATG

ncRNA
sORF
Alternative
InCDS
Overlapping
NMD

BMDC, Brain, MEF,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

242645

147

TTG...

LSV...

TTG

InCDS
NMD
Overlapping
sORF
Intronic

Liver, Neutrophil, NSC,
R1E, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

518149

CTG...

LQM...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

582551

ATG...

MLH...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, Glioma, Liver,
MEF, MESC, 3T3,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1817388

117

GTG...

VKT...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

514662

TTG...

LSS...

TTG

InCDS
Overlapping
sORF
Intronic
Alternative
NMD

B_cell, v6-5, 3T3,
MEF, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

89751

267

TTG...

LEI...

TTG

ncRNA
sORF

3T3, B_cell, BMDC,
Brain, E14, Liver,
NSC, R1E, Spleen_B_cell,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		12	sORFs_org_Mouse

445073

111

CTG...

LCT...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, MEF,
Spleen_B_cell, 3T3, BMDC,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

622284

CTG...

LHS...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

E14, NSC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

910978

ACG...

TRS...

ACG

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

631412

132

ATG...

MFF...

ATG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

3T3, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

929256

ATT...

ILT...

ATT

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

442261

204

CTG...

LLR...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, NSC,
B_cell, E14, MEF,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

287803

108

ATG...

MSL...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, BMDC,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
3023866	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq		1	sORFs_org_Mouse

600507

GTG...

VWL...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

913383

264

AAG...

KNY...

AAG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

521344

GTG...

VQT...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, E14, Liver,
Spleen_B_cell, 3T3, BMDC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

445194

CTG...

LLR...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
E14, v6-5, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1274608

ATG...

MSL...

ATG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
198886	ENSMUST00000126307	Sgpl1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1520517

144

GTG...

VAP...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

922789

189

CTG...

LIV...

CTG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

440113

TTG...

LQT...

TTG

Alternative
Overlapping
sORF
Upstream

MEF, 3T3, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
611631	ENSMUST00000155919	Sgpl1-210	protein_coding	Ribo-seq		1	sORFs_org_Mouse
767940	ENSMUST00000137833	Sgpl1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1734501

CTG...

LKK...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

426478

TTG...

LLW...

TTG

InCDS
Overlapping
sORF
Alternative
NMD
Intronic

E14, MEF, v6-5,
Spleen_B_cell, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

928754

ATT...

IGL...

ATT

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

7566

TTG...

LDC...

TTG

Alternative
Downstream
NMD
sORF
Intronic

Brain, Liver, MEF,
R1E, Skin_tumor, Spleen_B_cell,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	7	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

928911

129

AAG...

KHP...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

428014

TTG...

LQT...

TTG

Alternative
NMD
Overlapping
sORF
Upstream
ncRNA

Spleen_B_cell, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

916767

ATC...

IIF...

ATC

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse

214963

189

CTG...

LEN...

CTG

InCDS
NMD
Overlapping
sORF
Intronic

Liver, MEF, Neutrophil,
NSC, R1E, 3T3,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse

900291

222

AGG...

RAA...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

520714

ATG...

MAM...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Glioma, Liver, MEF,
MESC, Spleen_B_cell, 3T3,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

238631

GTG...

VKG...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, BMDC, Brain,
Liver, MEF, NSC,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

602384

GTG...

VPS...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, E14, 3T3,
BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
163587	ENSMUST00000143225	Sgpl1-207	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

928748

AGG...

RQP...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1178294

TTG...

LSG...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, NSC, BMDC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

929090

AGG...

RQG...

AGG

Alternative
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

58897

129

GTG...

VDA...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

3T3, Brain, E14,
Testis, Liver, MEF,
NSC, R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
58898	ENSMUST00000152316	Sgpl1-209	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

532520

TTG...

LLV...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, Liver, Spleen_B_cell,
3T3, BMDC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

200300

CTG...

LMA...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1282906

ACG...

TQR...

ACG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
198886	ENSMUST00000126307	Sgpl1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

75745

CTG...

LVA...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

3T3, BMDC, Testis,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

1232098

AAG...

KVV...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

914029

ACG...

TQR...

ACG

ncRNA
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
198886	ENSMUST00000126307	Sgpl1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1266902

AAG...

KHS...

AAG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

767536

150

CTG...

LQM...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

526412

CTG...

LFL...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

247459

120

GTG...

VTS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Liver, Neutrophil,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

247918

180

GTG...

VSK...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Liver, Neutrophil,
NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

443676

114

CTG...

LRG...

CTG

Alternative
Overlapping
sORF
Upstream

3T3, B_cell, E14,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

919643

ATT...

IWR...

ATT

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

902142

ATC...

ISK...

ATC

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1260040

ACG...

TAM...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

914765

ATC...

ISH...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1515605

TTG...

LYF...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

929408

132

AAG...

KKG...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

625666

GTG...

VPM...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

NSC, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
7871	ENSMUST00000122259	Sgpl1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

928721

AGG...

RTS...

AGG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

1882271

105

CTG...

LVC...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1282271

123

AAG...

KPQ...

AAG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
287804	ENSMUST00000092498	Sgpl1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

928779

AAG...

KLV...

AAG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
89752	ENSMUST00000142192	Sgpl1-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1060844

126

TTG...

LMH...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

Liver, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2125	ENSMUST00000150258	Sgpl1-208	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

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