Transcript 287804

Transcript

ID CARD

MetamORF ID

287804

ENSMUST00000092498

Name

Sgpl1-201

Strand

Biotype

protein_coding

Start-end positions

61098642-61147674

CDS Start-stop positions

61100868-61146284

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:20397

Aliases

AI428538,
D10Xrf456, ENSMUSG00000020097, MGI:1261415,
NCBI:20397, OFF:Sgpl1, S1PL,
Sgpl1, Spl

Chr 10

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
928686	33	ATA ...	ILG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
519965	63	ATG ...	MEN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1263977	60	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
903403	30	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
438338	102	ATG ...	MGN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
929260	126	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
527875	96	CTG ...	LAR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
7870	30	ATG ...	MGD ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
617944	90	ATG ...	MAW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC
426791	66	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
4366	30	ATG ...	MGD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1082736	66	ATG ...	MDI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
586553	30	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
7482	42	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
445073	111	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
622284	36	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
910978	75	ACG ...	TRS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929135	180	AGG ...	RFW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929256	51	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
444816	144	ATG ...	MVP ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
287803	108	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
445120	183	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
519824	45	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
521344	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
513606	87	ATG ...	MWM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
520714	33	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2685	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
768455	156	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
602384	99	GTG ...	VPS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
582551	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
532520	48	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
928748	78	AGG ...	RQP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1232098	30	AAG ...	KVV ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1266902	69	AAG ...	KHS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
767536	150	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
445194	66	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
442261	204	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
1260040	51	ACG ...	TAM ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
440113	81	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
5670	45	ATG ...	MLK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC
902142	75	ATC ...	ISK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1282271	123	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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