Transcript 2125 | MetamORF

Transcript

ID CARD

MetamORF ID

2125

ENSMUST00000150258

Name

Sgpl1-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

61098645-61147644

CDS Start-stop positions

61102045-61146284

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:20397

Aliases

AI428538,
D10Xrf456, ENSMUSG00000020097, MGI:1261415,
NCBI:20397, OFF:Sgpl1, S1PL,
Sgpl1, Spl

Chr 10

ORFs

70 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
257994	99	CTG ...	LVA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, MEF, R1E, Spleen_B_cell
434259	81	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
2685	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, NSC, R1E, Skin_tumor
5670	45	ATG ...	MLK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, NSC, R1E, Skin_tumor
197214	258	GTG ...	VMY ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
227239	39	ATG ...	MGN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Spleen_B_cell
255553	132	GTG ...	VDK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, NSC, R1E
513606	87	ATG ...	MWM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
229410	261	GTG ...	VVM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
7482	42	TTG ...	LKL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, R1E, Skin_tumor
224494	48	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Spleen_B_cell
176780	72	CTG ...	LEK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
427574	81	ATG ...	MLV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
1513288	114	CTG ...	LSY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
82858	117	CTG ...	LGG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
242645	147	TTG ...	LSV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Neutrophil, NSC, R1E
518149	87	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
586553	30	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
582551	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1817388	117	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell
243834	132	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Neutrophil, R1E
267897	69	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
519824	45	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
2124	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Skin_tumor
600507	60	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1520517	144	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
622284	36	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
60162	159	TTG ...	LAV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
1734501	69	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
73720	93	CTG ...	LHY ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	Liver, MEF, NSC, Spleen_B_cell
521344	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
510851	111	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC, Spleen_B_cell
636138	120	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
4366	30	ATG ...	MGD ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell
631412	132	ATG ...	MFF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
7566	72	TTG ...	LDC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell
428014	84	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
426478	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
214963	189	CTG ...	LEN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, MEF, Neutrophil, NSC, R1E
1082736	66	ATG ...	MDI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, NSC
1178294	66	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, NSC
200300	93	CTG ...	LMA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
71249	33	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
526412	93	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
520714	33	ATG ...	MAM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
196984	123	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E
247459	120	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Neutrophil, R1E
928733	48	ATG ...	MSP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, NSC
163586	69	GTG ...	VIL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
247918	180	GTG ...	VSK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Neutrophil, NSC, R1E
58897	129	GTG ...	VDA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
1515605	99	TTG ...	LYF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
424140	39	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC, R1E, Spleen_B_cell
527875	96	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, NSC, Spleen_B_cell
507053	48	CTG ...	LAH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
907345	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
902668	57	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
625666	45	GTG ...	VPM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
238631	48	GTG ...	VKG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
532520	48	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
75745	36	CTG ...	LVA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
514662	57	TTG ...	LSS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
1882271	105	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
426791	66	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, Spleen_B_cell
1060844	126	TTG ...	LMH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, Neutrophil
519965	63	ATG ...	MEN ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, NSC, Spleen_B_cell
257935	45	GTG ...	VTQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell

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