Transcript 89752 | MetamORF

Transcript

ID CARD

MetamORF ID

89752

ENSMUST00000142192

Name

Sgpl1-206

Strand

Biotype

processed_transcript

Start-end positions

61117452-61147652

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20397

Aliases

AI428538,
D10Xrf456, ENSMUSG00000020097, MGI:1261415,
NCBI:20397, OFF:Sgpl1, S1PL,
Sgpl1, Spl

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918729	72	AGG ...	RQG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
904984	60	ATT ...	IAP ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
907345	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
90428	258	TTG ...	LES ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
838402	63	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
928733	48	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
89751	267	TTG ...	LEI ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
213667	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
913383	264	AAG ...	KNY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
198885	42	GTG ...	VEC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
922789	189	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
928754	54	ATT ...	IGL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
916767	54	ATC ...	IIF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
900291	222	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
166590	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
914029	78	ACG ...	TQR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
428014	84	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
919643	48	ATT ...	IWR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
928721	63	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
928779	45	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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