Gene NCBI:11843 | MetamORF

Gene

ID CARD

NCBI:11843

Aliases

AA407803
Arf4, ENSMUSG00000021877, MGI:99433
NCBI:11843, OFF:Arf4

Chromosome

Transcripts

97 ORFs
6 known transcripts
217 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

343610

ENSMUST00000022429

Arf4-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
676944	192	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, v6-5
10698	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
1178922	39	AGG ...	RGN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
30236	78	ATG ...	MLV ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
674654	222	CTG ...	LSA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
10812	30	CTG ...	LAR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
10820	45	TTG ...	LDW ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
947278	141	ATA ...	IAM ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1179431	132	ATC ...	IVK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
945833	51	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1310428	117	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
30102	72	GTG ...	VVK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
945562	57	ATA ...	IAM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1309502	120	ACG ...	TPS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1308495	66	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
30272	129	GTG ...	VKE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, v6-5
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
945384	180	ACG ...	TPR ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
945233	129	ACG ...	TSC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
30361	75	TTG ...	LVV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
10995	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC
678391	171	GTG ...	VTW ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
30054	135	ATG ...	MIV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
946971	66	AAG ...	KIK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
676319	213	TTG ...	LER ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, NSC, v6-5
1308980	225	ATT ...	ILS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1309813	36	AGG ...	RGN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
348492	51	GTG ...	VSR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, NSC, v6-5
343609	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, Neutrophil, v6-5
1614438	42	ATG ...	MFD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF

10683

ENSMUST00000171282

Arf4-206

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29009	123	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1536078	84	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
28704	135	CTG ...	LQD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
11071	96	TTG ...	LDA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
10698	36	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Skin_tumor
11278	198	CTG ...	LQD ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
786992	138	GTG ...	VYC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1536624	165	ATG ...	MYA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
28965	147	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
1451562	111	TTG ...	LTV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, R1E
10995	33	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
10762	48	CTG ...	LYE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
1536287	177	ATG ...	MLN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
29428	60	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
29401	126	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11035	93	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
343609	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
29720	69	CTG ...	LYK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11153	156	CTG ...	LPN ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
11206	210	CTG ...	LED ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
28947	120	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
10685	36	CTG ...	LDW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
11252	186	GTG ...	VLL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
11055	54	GTG ...	VFS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Skin_tumor
29050	135	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1536658	96	CTG ...	LCI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
10820	45	TTG ...	LDW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
946831	102	AAG ...	KCH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
10936	57	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
1536723	81	ATG ...	MYD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11120	48	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
11202	111	CTG ...	LQS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
946950	120	AAG ...	KLG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
10812	30	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
11013	42	CTG ...	LFG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
345379	36	TTG ...	LFH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11262	183	CTG ...	LLL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
348492	51	GTG ...	VSR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
1535977	39	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

28368

ENSMUST00000166075

Arf4-203

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11013	42	CTG ...	LFG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
28704	135	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
945801	36	ATT ...	IGC ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
343609	90	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Spleen_B_cell
10936	57	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC
11120	48	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Testis
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell, Testis
11035	93	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, C2C12, Spleen_B_cell, Testis
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
946155	30	AAG ...	KQM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
946133	39	AGG ...	RSA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, MEF
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, BMDC, Spleen_B_cell, Testis
10995	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29428	60	CTG ...	LKL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Spleen_B_cell, Testis
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Spleen_B_cell
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
348492	51	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Spleen_B_cell
29720	69	CTG ...	LYK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Spleen_B_cell, Testis
29009	123	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
944687	78	ACG ...	TTI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
10820	45	TTG ...	LDW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell
944870	57	AAG ...	KLG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, BMDC, Spleen_B_cell, Testis
11071	96	TTG ...	LDA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Spleen_B_cell
11055	54	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29401	126	GTG ...	VET ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell, Testis
28947	120	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
945233	129	ACG ...	TSC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF, Spleen_B_cell, Testis
28965	147	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
10685	36	CTG ...	LDW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell, Testis
10698	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, Spleen_B_cell
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
945782	45	AGG ...	RDW ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
945920	33	ATC ...	ICQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
29050	135	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
10812	30	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell, Testis
945036	63	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
946046	87	AAG ...	KCH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell, Testis
10762	48	CTG ...	LYE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Spleen_B_cell, Testis
945833	51	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC

674713

ENSMUST00000167376

Arf4-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1308081	63	AAG ...	KEL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1307442	48	ATC ...	IVK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
11120	48	CTG ...	LQS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, Liver, MEF
786992	138	GTG ...	VYC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	B_cell, MEF
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, MEF
1309898	66	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
944870	57	AAG ...	KLG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
344240	30	TTG ...	LCY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, E14, MEF
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, E14, Liver, MEF
1310082	33	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
1306830	78	AAG ...	KNP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1310215	81	AAG ...	KMS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	NMD sORF	E14
946133	39	AGG ...	RSA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
28947	120	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF
10762	48	CTG ...	LYE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, E14, MEF
11053	57	CTG ...	LVC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF
11105	72	GTG ...	VLH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, MEF
945782	45	AGG ...	RDW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
28704	135	CTG ...	LQD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, MEF
350715	48	ATG ...	MRD ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF
1307681	75	ACG ...	TLN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, MEF
28965	147	CTG ...	LED ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, E14, MEF
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, Liver
29009	123	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, MEF
11035	93	CTG ...	LPN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, Liver, MEF
10685	36	CTG ...	LDW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, E14, MEF
944852	69	AGG ...	RMQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	NMD sORF	E14
1307170	75	ATC ...	ISE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
945920	33	ATC ...	ICQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	NMD sORF	E14
28868	87	ATG ...	MSK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, E14, MEF
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, B_cell, MEF

30055

ENSMUST00000112318

Arf4-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29110	48	GTG ...	VVC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30054	135	ATG ...	MIV ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis
28997	123	GTG ...	VKA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
350715	48	ATG ...	MRD ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E
348492	51	GTG ...	VSR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, R1E
345379	36	TTG ...	LFH ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E
11053	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
344240	30	TTG ...	LCY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, R1E
29803	96	TTG ...	LTV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
11105	72	GTG ...	VLH ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Liver, MEF, R1E
30361	75	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
28961	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF, R1E
28728	48	TTG ...	LQT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E
28503	63	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30236	78	ATG ...	MLV ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
29553	78	ATG ...	MSC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E
29498	66	ATG ...	MQC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E
28623	60	TTG ...	LVV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
30272	129	GTG ...	VKE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
30102	72	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
1614438	42	ATG ...	MFD ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
28868	87	ATG ...	MSK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E
29391	57	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E

849781

ENSMUST00000171207

Arf4-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29553	78	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
11025	45	GTG ...	VKE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC, v6-5
944852	69	AGG ...	RMQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
945562	57	ATA ...	IAM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
10682	51	ATG ...	MIV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF, NSC, v6-5

3039950

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30054	135	ATG ...	MIV ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

97 ORFs
6 known transcripts
217 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

676944

192

CTG...

LSL...

CTG

Alternative
sORF
Upstream

3T3, B_cell, MEF,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

28503

ATG...

MLV...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
ncRNA

E14, Liver, MEF,
NSC, v6-5, B_cell,
BMDC, Spleen_B_cell, Testis,
Brain, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse

29009

123

GTG...

VLL...

GTG

ncRNA
sORF
Downstream
NMD

Brain, Spleen_B_cell, Testis,
B_cell, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

11013

CTG...

LFG...

CTG

InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, BMDC, Spleen_B_cell,
Testis, Brain, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

29553

ATG...

MSC...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
NMD
Downstream

Brain, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, 3T3, Liver,
R1E, B_cell, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
849781	ENSMUST00000171207	Arf4-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	moderate	4	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

29498

ATG...

MQC...

ATG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD
Downstream

E14, MEF, NSC,
v6-5, Brain, B_cell,
BMDC, Liver, 3T3,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

1536078

TTG...

LLI...

TTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

28704

135

CTG...

LQD...

CTG

ncRNA
sORF
Downstream
NMD

Brain, Spleen_B_cell, Testis,
B_cell, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1308081

AAG...

KEL...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

28997

123

GTG...

VKA...

GTG

Alternative
Overlapping
sORF
Upstream
NMD
ncRNA

E14, Liver, MEF,
Neutrophil, v6-5, 3T3,
Brain, R1E, B_cell,
BMDC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	5	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse

29391

GTG...

VVK...

GTG

ncRNA
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

BMDC, Brain, E14,
Liver, MEF, NSC,
v6-5, B_cell, Spleen_B_cell,
Testis, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

10698

ATG...

MLL...

ATG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
BMDC, Brain, Skin_tumor,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		3	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

29110

GTG...

VVC...

GTG

InCDS
Overlapping
sORF
ncRNA
NMD
Downstream

3T3, Brain, Liver,
MEF, R1E, E14,
NSC, v6-5, B_cell,
BMDC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

28623

TTG...

LVV...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
ncRNA

E14, Liver, MEF,
NSC, v6-5, B_cell,
BMDC, Spleen_B_cell, Testis,
Brain, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1178922

AGG...

RGN...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

945801

ATT...

IGC...

ATT

Alternative
Downstream
NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

30054

135

ATG...

MIV...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, R1E, Spleen_B_cell,
Testis, B_cell, E14,
NSC, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		10	sORFs_org_Mouse Johnstone2016
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse
3039950	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

343609

CTG...

LSR...

CTG

Alternative
NMD
sORF
Upstream
ncRNA

B_cell, Spleen_B_cell, R1E,
3T3, Brain, E14,
Liver, MEF, Neutrophil,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	9	sORFs_org_Mouse

10682

ATG...

MIV...

ATG

ncRNA
sORF
NMD
Alternative
InCDS
Overlapping
Downstream
Intronic

Skin_tumor, B_cell, MEF,
Brain, E14, 3T3,
R1E, Spleen_B_cell, Testis,
BMDC, Liver, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
849781	ENSMUST00000171207	Arf4-205	retained_intron	Ribo-seq		8	sORFs_org_Mouse

30236

ATG...

MLV...

ATG

Alternative
InCDS
Overlapping
sORF

B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, v6-5,
3T3, Glioma, MESC,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		11	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse Johnstone2016

10936

GTG...

VVF...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, BMDC, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

674654

222

CTG...

LSA...

CTG

Alternative
sORF
Upstream

3T3, B_cell, MEF,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

11071

TTG...

LDA...

TTG

ncRNA
sORF
InCDS
NMD
Overlapping

Brain, Skin_tumor, B_cell,
BMDC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

11025

GTG...

VKE...

GTG

ncRNA
sORF
Intronic
Alternative
InCDS
Overlapping
Downstream
NMD

Skin_tumor, BMDC, Brain,
E14, Liver, MEF,
NSC, v6-5, Spleen_B_cell,
Testis, R1E, 3T3,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
849781	ENSMUST00000171207	Arf4-205	retained_intron	Ribo-seq		9	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

350715

ATG...

MRD...

ATG

Alternative
Downstream
Overlapping
sORF
ncRNA
NMD

MEF, R1E, Brain,
Spleen_B_cell, 3T3, B_cell,
BMDC, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse

10812

CTG...

LAR...

CTG

Alternative
InCDS
Overlapping
sORF
ncRNA
NMD

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
Brain, Skin_tumor, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

11120

CTG...

LQS...

CTG

Downstream
NMD
sORF
ncRNA

BMDC, Testis, B_cell,
Liver, MEF, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

1307442

ATC...

IVK...

ATC

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

348492

GTG...

VSR...

GTG

sORF
Upstream
NMD
ncRNA

3T3, Brain, Liver,
R1E, B_cell, Spleen_B_cell,
E14, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		5	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

11278

198

CTG...

LQD...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

11035

CTG...

LPN...

CTG

Downstream
NMD
sORF
ncRNA

Spleen_B_cell, Testis, Brain,
Skin_tumor, 3T3, B_cell,
BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

29803

TTG...

LTV...

TTG

Alternative
NMD
Overlapping
sORF
Upstream
ncRNA

B_cell, BMDC, C2C12,
Spleen_B_cell, Testis, 3T3,
Brain, Liver, MEF,
R1E, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		7	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

10820

TTG...

LDW...

TTG

Alternative
InCDS
Overlapping
sORF
NMD
ncRNA

E14, Liver, MEF,
Neutrophil, NSC, v6-5,
B_cell, BMDC, Spleen_B_cell,
Brain, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse

11053

CTG...

LVC...

CTG

Alternative
Downstream
NMD
sORF
ncRNA
Overlapping

Spleen_B_cell, Testis, Brain,
Skin_tumor, E14, MEF,
NSC, v6-5, R1E,
3T3, B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	strong	2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	strong	6	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

786992

138

GTG...

VYC...

GTG

NMD
sORF
ncRNA

B_cell, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

944852

AGG...

RMQ...

AGG

Intronic
sORF
NMD

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
849781	ENSMUST00000171207	Arf4-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

946155

AAG...

KQM...

AAG

InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

946133

AGG...

RSA...

AGG

Alternative
Downstream
NMD
sORF

BMDC, MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

10995

CTG...

LLA...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Spleen_B_cell, Brain,
Skin_tumor, E14, Liver,
MEF, Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse

947278

141

ATA...

IAM...

ATA

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1536624

165

ATG...

MYA...

ATG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1179431

132

ATC...

IVK...

ATC

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

29428

CTG...

LKL...

CTG

InCDS
NMD
Overlapping
sORF
ncRNA

BMDC, Spleen_B_cell, Testis,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1309898

AGG...

RSS...

AGG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

28965

147

CTG...

LED...

CTG

ncRNA
sORF
NMD
Downstream

Brain, B_cell, BMDC,
E14, MEF, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

944870

AAG...

KLG...

AAG

NMD
sORF
Downstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

11105

GTG...

VLH...

GTG

ncRNA
sORF
Alternative
Downstream
NMD
Overlapping

Brain, Skin_tumor, Spleen_B_cell,
Testis, 3T3, Liver,
MEF, R1E, B_cell,
BMDC, E14, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse

1451562

111

TTG...

LTV...

TTG

ncRNA
sORF

BMDC, Brain, MEF,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		4	sORFs_org_Mouse

344240

TTG...

LCY...

TTG

NMD
sORF
Downstream
InCDS
Overlapping
ncRNA

3T3, B_cell, BMDC,
E14, MEF, Spleen_B_cell,
Brain, Liver, R1E,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse

28728

TTG...

LQT...

TTG

NMD
sORF
Alternative
InCDS
Overlapping
Downstream
ncRNA

3T3, B_cell, BMDC,
E14, Liver, MEF,
Brain, R1E, Spleen_B_cell,
Testis, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	6	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

945833

AAG...

KIK...

AAG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

10762

CTG...

LYE...

CTG

ncRNA
sORF
NMD
Alternative
Downstream

Brain, Skin_tumor, 3T3,
B_cell, BMDC, E14,
MEF, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

29720

CTG...

LYK...

CTG

InCDS
NMD
Overlapping
sORF
ncRNA

BMDC, Spleen_B_cell, Testis,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1310082

AGG...

RKE...

AGG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1536287

177

ATG...

MLN...

ATG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1306830

AAG...

KNP...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

944687

ACG...

TTI...

ACG

InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

345379

TTG...

LFH...

TTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
ncRNA

3T3, Brain, MEF,
R1E, B_cell, Spleen_B_cell,
E14, Liver, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1310215

AAG...

KMS...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

1310428

117

AGG...

RKE...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

30102

GTG...

VVK...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5, 3T3,
BMDC, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse

28947

120

CTG...

LLL...

CTG

NMD
sORF
Downstream
ncRNA

3T3, B_cell, BMDC,
MEF, Spleen_B_cell, Testis,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

29401

126

GTG...

VET...

GTG

ncRNA
sORF
Downstream
NMD
Overlapping

Brain, B_cell, BMDC,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

945562

ATA...

IAM...

ATA

Alternative
InCDS
Overlapping
sORF
Intronic

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
849781	ENSMUST00000171207	Arf4-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1309502

120

ACG...

TPS...

ACG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

11055

GTG...

VFS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA

B_cell, Spleen_B_cell, BMDC,
Brain, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		3	sORFs_org_Mouse

1308495

CTG...

LEA...

CTG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

30361

TTG...

LVV...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
Liver, Spleen_B_cell, Testis,
B_cell, E14, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse

28961

GTG...

VPP...

GTG

Alternative
Overlapping
sORF
Upstream
ncRNA
NMD

3T3, Brain, Liver,
MEF, R1E, B_cell,
BMDC, Spleen_B_cell, Testis,
E14, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse

30272

129

GTG...

VKE...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, E14,
MEF, NSC, v6-5,
3T3, BMDC, Liver,
R1E, Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq		9	sORFs_org_Mouse

11153

156

CTG...

LPN...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

28868

ATG...

MSK...

ATG

Alternative
Downstream
NMD
sORF
ncRNA
Overlapping

BMDC, Spleen_B_cell, Testis,
Brain, E14, MEF,
NSC, v6-5, B_cell,
3T3, Glioma, Liver,
MESC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse Johnstone2016

945782

AGG...

RDW...

AGG

NMD
sORF
Alternative
Downstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse

945384

180

ACG...

TPR...

ACG

sORF
Upstream

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

945233

129

ACG...

TSC...

ACG

NMD
sORF
Upstream

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

11206

210

CTG...

LED...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

10685

CTG...

LDW...

CTG

ncRNA
sORF
Alternative
Downstream
NMD

Brain, Skin_tumor, Spleen_B_cell,
Testis, 3T3, B_cell,
BMDC, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq	strong	2	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

11252

186

GTG...

VLL...

GTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

1307681

ACG...

TLN...

ACG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

29050

135

TTG...

LAF...

TTG

ncRNA
sORF
Alternative
Downstream
NMD

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1536658

CTG...

LCI...

CTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

946831

102

AAG...

KCH...

AAG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

678391

171

GTG...

VTW...

GTG

Alternative
sORF
Upstream

3T3, B_cell, MEF,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

1536723

ATG...

MYD...

ATG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

11202

111

CTG...

LQS...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		10	sORFs_org_Mouse

946950

120

AAG...

KLG...

AAG

ncRNA
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

946971

AAG...

KIK...

AAG

Alternative
InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

676319

213

TTG...

LER...

TTG

Alternative
sORF
Upstream

3T3, B_cell, MEF,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

1307170

ATC...

ISE...

ATC

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

945920

ATC...

ICQ...

ATC

NMD
sORF
Alternative
Downstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
674713	ENSMUST00000167376	Arf4-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1308980

225

ATT...

ILS...

ATT

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

11262

183

CTG...

LLL...

CTG

ncRNA
sORF

B_cell, BMDC, Brain,
MEF, R1E, Skin_tumor,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

945036

ATC...

ISS...

ATC

InCDS
NMD
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1535977

TTG...

LVF...

TTG

ncRNA
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
10683	ENSMUST00000171282	Arf4-206	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

1614438

ATG...

MFD...

ATG

Downstream
sORF

Glioma, Liver, MEF,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
30055	ENSMUST00000112318	Arf4-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

946046

AAG...

KCH...

AAG

Alternative
NMD
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
28368	ENSMUST00000166075	Arf4-203	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1309813

AGG...

RGN...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
343610	ENSMUST00000022429	Arf4-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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